| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3433 |
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| Symbol | nlpD |
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| ID | 1171108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3578320 |
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| End bp | 3579216 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637345242 |
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| Product | lipoprotein NlpD |
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| Protein accession | NP_718986 |
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| Protein GI | 24374943 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGTTGAATG TGGGTTTACT TTTAAACCTC AGTTTATTGT TGTTGCTTGC AGGCTGTAGC
TTTCAGGCGA GTCGCCCCGC ACCTGTCGAA AGCCTCTCTA AGCATCATTC AAAACAGAAT
AAAGGTCATA TTAAAGGCGA GTCTTATAAA GTTAAAAAAG GTGACACCCT TTACTCAATT
TCTTGGGCTG TCGGCAAAGA TTACGCAGAA ATTGCCAAAA TTAATCAATT AGATAAATCG
TTTACTATCT ATCCTGGACA GGTTTTGTAT TTAACATATG ACCACAGTCA AAATAGCAAA
GCATCTACGA TTTTAGGTGG AATTAATTCG GCAAACAAAG GCCTTTATCA GTTAAATTCA
TCTAAAAAAC AATATGTTAG TGATGATTCT GCAGTTGAGG GGCTATCTAG TGAACCGCAG
AAAAAAACAC TTGATCAGAA AGCAAAGCCT GCGTATTCTG CAACAAGCTC TCAACAAAGA
TTTAACTCTT CAATCGTTGC CCCGACTTCA ACACTGCCCG ACAGTGTAAG CCAGTGGCAA
TGGCCTGTAA GAGGTAAACT GATTGGGACA TACTCTGCCA ATGAGCAGGG AAATAAAGGT
ATTAAGATCG CGGGAAAACG TGGAGATATC ATCAAAGCCG CTGCAGATGG GCGGGTGGTA
TATGCAGGTA GTGCGCTTAG GGGGTATGGT AATTTAGTGA TTATTAAACA TAGTGACGAT
TACCTTAGTG CCTATGCTCA TGCAGATCAG ATCTTAGTCG ATGAAAAGCA ACATGTCCTC
GCTGGACAGA CGATTGCTAA AATGGGCAGT ACAGGTACTA ATCAGGTCAT GCTACGTTTT
GAAATTCGTT ACCATGGTCA GTCTGTTAAC CCACTCAACT ACTTACCTAA GCAATGA
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| Protein sequence | MLNVGLLLNL SLLLLLAGCS FQASRPAPVE SLSKHHSKQN KGHIKGESYK VKKGDTLYSI
SWAVGKDYAE IAKINQLDKS FTIYPGQVLY LTYDHSQNSK ASTILGGINS ANKGLYQLNS
SKKQYVSDDS AVEGLSSEPQ KKTLDQKAKP AYSATSSQQR FNSSIVAPTS TLPDSVSQWQ
WPVRGKLIGT YSANEQGNKG IKIAGKRGDI IKAAADGRVV YAGSALRGYG NLVIIKHSDD
YLSAYAHADQ ILVDEKQHVL AGQTIAKMGS TGTNQVMLRF EIRYHGQSVN PLNYLPKQ
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