Gene SO_3433 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3433 
SymbolnlpD 
ID1171108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp3578320 
End bp3579216 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content41% 
IMG OID637345242 
Productlipoprotein NlpD 
Protein accessionNP_718986 
Protein GI24374943 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0739] Membrane proteins related to metalloendopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTTGAATG TGGGTTTACT TTTAAACCTC AGTTTATTGT TGTTGCTTGC AGGCTGTAGC 
TTTCAGGCGA GTCGCCCCGC ACCTGTCGAA AGCCTCTCTA AGCATCATTC AAAACAGAAT
AAAGGTCATA TTAAAGGCGA GTCTTATAAA GTTAAAAAAG GTGACACCCT TTACTCAATT
TCTTGGGCTG TCGGCAAAGA TTACGCAGAA ATTGCCAAAA TTAATCAATT AGATAAATCG
TTTACTATCT ATCCTGGACA GGTTTTGTAT TTAACATATG ACCACAGTCA AAATAGCAAA
GCATCTACGA TTTTAGGTGG AATTAATTCG GCAAACAAAG GCCTTTATCA GTTAAATTCA
TCTAAAAAAC AATATGTTAG TGATGATTCT GCAGTTGAGG GGCTATCTAG TGAACCGCAG
AAAAAAACAC TTGATCAGAA AGCAAAGCCT GCGTATTCTG CAACAAGCTC TCAACAAAGA
TTTAACTCTT CAATCGTTGC CCCGACTTCA ACACTGCCCG ACAGTGTAAG CCAGTGGCAA
TGGCCTGTAA GAGGTAAACT GATTGGGACA TACTCTGCCA ATGAGCAGGG AAATAAAGGT
ATTAAGATCG CGGGAAAACG TGGAGATATC ATCAAAGCCG CTGCAGATGG GCGGGTGGTA
TATGCAGGTA GTGCGCTTAG GGGGTATGGT AATTTAGTGA TTATTAAACA TAGTGACGAT
TACCTTAGTG CCTATGCTCA TGCAGATCAG ATCTTAGTCG ATGAAAAGCA ACATGTCCTC
GCTGGACAGA CGATTGCTAA AATGGGCAGT ACAGGTACTA ATCAGGTCAT GCTACGTTTT
GAAATTCGTT ACCATGGTCA GTCTGTTAAC CCACTCAACT ACTTACCTAA GCAATGA
 
Protein sequence
MLNVGLLLNL SLLLLLAGCS FQASRPAPVE SLSKHHSKQN KGHIKGESYK VKKGDTLYSI 
SWAVGKDYAE IAKINQLDKS FTIYPGQVLY LTYDHSQNSK ASTILGGINS ANKGLYQLNS
SKKQYVSDDS AVEGLSSEPQ KKTLDQKAKP AYSATSSQQR FNSSIVAPTS TLPDSVSQWQ
WPVRGKLIGT YSANEQGNKG IKIAGKRGDI IKAAADGRVV YAGSALRGYG NLVIIKHSDD
YLSAYAHADQ ILVDEKQHVL AGQTIAKMGS TGTNQVMLRF EIRYHGQSVN PLNYLPKQ