Gene SO_3432 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3432 
SymbolrpoS 
ID1171107 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3577258 
End bp3578238 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content46% 
IMG OID637345241 
ProductRNA polymerase sigma-38 factor 
Protein accessionNP_718985 
Protein GI24374942 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCGCA TAAATAGCAC TGCCGCAGAA GAACTAGTAG ATTTTTCCGT TGATACCGCT 
GAGTTTGATC TCGATAAAGA GGATATCGCC GCTGATTTAG TTCAAGAATT AGGACTCGAA 
CAACAGGTTC AAGATGACCT GCAAAAAAAT CTTGATGCCA CACAACTCTA TTTAGGTGAA 
ATAGGGTTTT CCCCACTGCT TAGCGCAGAA GAAGAAGTGT ATTTTTCCCG TAAGGCCTTA 
AAAGGCTGCG AAAAATCCCG TAATCGGATG ATCGAAAGTA ACCTGCGACT CGTGGTTAAA 
ATTGCCCGCC GTTACAATAA TCGTGGTCTT GCGCTGCTGG ATTTAATCGA AGAGGGTAAT 
CTTGGTTTGA TCCGTGCGGT AGAAAAATTT GACCCAGAAA GAGGTTTCCG TTTCTCAACC 
TATGCGACTT GGTGGATCAG ACAAACCATT GAACGCGCAA TCATGAATCA AACCCGTACG 
ATTCGCTTGC CTATCCATGT GGTGAAAGAG CTTAACGTGT ACTTACGTAC GGCCCGTGAA 
TTAGCGCAAA AACTTGACCA CGAGCCAACG GCAGAAGAAA TTGCCGAGAA ACTACAAGTC 
TCTAGTGTGG ATGTTAGCCG CATGCTGAAG CTCAACGAGA AGATCACTTC TGTTGATGTC 
CCTCTCGGCG GTGATAATGA TAAAGCCTTA CTCGATGTGC TGGCTGATGA TGATAACGTA 
GGCCCAGATT ACAAGGTGCA AGACGAAGAT ATTTCTAACT CAGTGGTTAA GTGGCTCAAT 
GAACTCAATA CCAAGCAAAG AGAAGTGTTA GCGCGCCGCT TTGGGTTATT GGGTTATGAG 
CCATCGACTC TTGAAGATGT GGGCGCTGAA ATTGGCCTTA CTCGCGAGCG AGTTCGTCAA 
ATCCAAGTGG AAGCCTTAAA ACGCCTGCGT GATCTGCTTG GCGCACAAGG GCTATCTGTA 
GAGGCTCTAT TTAGAAATTA A
 
Protein sequence
MSRINSTAAE ELVDFSVDTA EFDLDKEDIA ADLVQELGLE QQVQDDLQKN LDATQLYLGE 
IGFSPLLSAE EEVYFSRKAL KGCEKSRNRM IESNLRLVVK IARRYNNRGL ALLDLIEEGN 
LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE LNVYLRTARE 
LAQKLDHEPT AEEIAEKLQV SSVDVSRMLK LNEKITSVDV PLGGDNDKAL LDVLADDDNV 
GPDYKVQDED ISNSVVKWLN ELNTKQREVL ARRFGLLGYE PSTLEDVGAE IGLTRERVRQ 
IQVEALKRLR DLLGAQGLSV EALFRN