Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3428 |
Symbol | alaS |
ID | 1171103 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3569751 |
End bp | 3572375 |
Gene Length | 2625 bp |
Protein Length | 874 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637345237 |
Product | alanyl-tRNA synthetase |
Protein accession | NP_718981 |
Protein GI | 24374938 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0013] Alanyl-tRNA synthetase |
TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTATCAAA CGACAGCAGC GCTTAGAAGT GCTTTCCTCG AATTTTTCCG CAGCAATGGT CACCAAGTTG TGGACAGTAG TTCTCTTGTA CCAGGCAACG ATCCCACGCT CTTATTCACC AACGCCGGTA TGAACCAGTT CAAGGACGTG TTTCTTGGCA TGGACAAACG TAGCTATACA CGTGCGACCA CTGCCCAACG CTGCGTCCGT GCGGGTGGTA AACACAACGA CTTAGATAAT GTGGGTTATA CCGCACGTCA CCACACTTTT TTCGAAATGC TGGGTAACTT CAGTTTTGGT GATTATTTCA AAGAAGATGC GATTCGTTTT GGTTGGACAT TCCTGACCGA AGTATTGATG CTACCAAAGG AACGTCTGTG CGTAACTATT TACCAAACAG ACGATGAAGC CTTTGAAATC TGGAATAAAA AAATAGGCGT TGCCGCTGAG AATATCATCC GTATCGGTGA TAACAAGGGC GCGCCATATG CTTCAGATAA CTTCTGGCAA ATGGGCGACA CCGGTCCTTG TGGTCCTTGT ACCGAAATTT TCTATGACCA CGGCGACCAC ATTTGGGGCG GACGTCCAGG CAGCCCTGAA GAAGATGGCG ATCGTTTCAT CGAAATTTGG AACATTGTAT TCATGCAATA CAATCGCCAA GCCTCTGGCG AAATGTTGCC GCTACCAAAA CCATCGGTTG ATACCGGTAT GGGTATCGAG CGTATTGCCG CGATTATGCA AGGTGTTCAT TCAAACTACG AAATCGATAT TTTCCGCGCT TTGATTGCTA AAGCGGCTGA AATCATCGGT GTGGCTGACT TATCTAACAA GTCACTGCGC GTGATTGCCG ACCATATCCG TTCATGTGCC TTCTTAGTTG CCGATGGTGT GATGCCATCG AACGAAGGTC GTGGCTATGT ACTGCGCCGT ATTATTCGCC GCGCCGTTCG TCATGGTAAC AAGTTAGGTG CAACCGAAGC CTTCTTCTAC AAGTTGGTTC CGACGCTGAT CGATGTGATG GGTGATGCGG CTAAAGGCCT GGCTGAAACT CAAGTTATTG TTGAAAAAGC CCTTAAAGCG GAAGAAGAAC AGTTTGCCCG TACATTAGAG CGTGGTTTAG GCATTCTGGA TAGCGCATTG AACGAATTAC AAGGTGACAC CTTAGACGGT GAAACAGTCT TTAAACTGTA CGATACCTAC GGCTTCCCTG TGGATTTAAC TGCTGACGTG TGTCGTGAGC GTAACATTAT TGTCGATGAA GCTGGTTTTG AAGCTGCGAT GGCTGAACAA CGCAGTCGCG CGCAAGCCGC GGGTAACTTT GGTGCCGATT ATAACGCAGC ACTTAAGATC GATGCTGAAA CCGCATTCTG TGGTTACTCA GAACTTACTG GCAATGCCAA AGTCACTGCA CTGTACCTAA ATGGCGAGTC AGTGCCTGCG ATCAACACTG GCGATGACGC TGTCGTTGTG CTCGATGTAA CCCCTTTCTA TGCTGAATCG GGCGGCCAAG TGGGTGACAA GGGCGTATTA ATGGCTCAAG GCATTGAGTT TACGGTTAAC GATACGCAAA AGTTTGGTCA AGCTTCAGGT CACAAAGGAA CCTTAACGGC TGGCAGTTTA AGTGTTGGCC AAGTGCTTGA AGCCAAAGTG GATAAAAAGC TACGTCACCG CACTCAGTTA AACCACTCTG TAACTCACTT ATTGCATGCT GCACTGCGCC AAGTGTTGGG CACTCATGTT ACTCAAAAAG GCTCATTGGT TGACCCAGAG CGTTTACGCT TTGACTTCTC CCATTTCGAA GCGGTAAAAC CTTTCGAACT TAAGCAGGTT GAAGAGTTAG TCAATACGCA AATTCGTCGT AACCATGAGC TTAAAGTGGC TGAAATGGCG ATTGATGAAG CCAAAGAAAA AGGCGCTATG GCGCTCTTTG GTGAAAAATA TGATTCACAG GTTCGTGTCG TGACCATGGG CGATTTCTCA ATCGAACTTT GTGGTGGTAC GCATGTTGGC CGCACTGGTG ATATTGGTTT ATTTAAGATC ACTTCAGAAG GTGGTATAGC CGCAGGTGTA CGCCGTATTG AAGCGGTTAC AGGTGCTGCG GCTATGGCAT ATGTGGCGCA GCAACAGGCT GAGCTTGAGG AAGCCGCATC ACTTCTGAAA GCTGATGCTC ATTCAGTTGT TACCAAACTG AAAGTCCAAT TAGATAAAAT GAAGCAACTT GAGAAAGAAA TGCAGCAACT TAAAGATAAG TTAGCGGCTG CAGCAAGTGC GGATTTAGCG GGTGATGCGG TAGTGGTTAA TGGCGTCAAT GTGCTGATTA AAAAGCTAGA AGGCGTTGAA GCTGGTGCGT TACGCGGTCT GCAAGATGAG CTTAAACAAA AGCTTAAATC CGCTATTATC GTGTTAGGTG TAGCACAAGA AGGTAAAGTC AACCTTATTG CAGGTGTTAG CAACGACTTA ATCGCTAAAA TCAAAGCGGG TGAGCTGGTT GCTATGGTCG CCACACAAGT CGGTGGTAAA GGTGGTGGTC GCCCTGATAT GGCCCAAGCA GGTGGTAGCC AACCAGAAAA TCTGGATGCG GCACTGTCAC AAGTATTACC TTGGATTACT GAGCGTTTAG CTTAA
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Protein sequence | MYQTTAALRS AFLEFFRSNG HQVVDSSSLV PGNDPTLLFT NAGMNQFKDV FLGMDKRSYT RATTAQRCVR AGGKHNDLDN VGYTARHHTF FEMLGNFSFG DYFKEDAIRF GWTFLTEVLM LPKERLCVTI YQTDDEAFEI WNKKIGVAAE NIIRIGDNKG APYASDNFWQ MGDTGPCGPC TEIFYDHGDH IWGGRPGSPE EDGDRFIEIW NIVFMQYNRQ ASGEMLPLPK PSVDTGMGIE RIAAIMQGVH SNYEIDIFRA LIAKAAEIIG VADLSNKSLR VIADHIRSCA FLVADGVMPS NEGRGYVLRR IIRRAVRHGN KLGATEAFFY KLVPTLIDVM GDAAKGLAET QVIVEKALKA EEEQFARTLE RGLGILDSAL NELQGDTLDG ETVFKLYDTY GFPVDLTADV CRERNIIVDE AGFEAAMAEQ RSRAQAAGNF GADYNAALKI DAETAFCGYS ELTGNAKVTA LYLNGESVPA INTGDDAVVV LDVTPFYAES GGQVGDKGVL MAQGIEFTVN DTQKFGQASG HKGTLTAGSL SVGQVLEAKV DKKLRHRTQL NHSVTHLLHA ALRQVLGTHV TQKGSLVDPE RLRFDFSHFE AVKPFELKQV EELVNTQIRR NHELKVAEMA IDEAKEKGAM ALFGEKYDSQ VRVVTMGDFS IELCGGTHVG RTGDIGLFKI TSEGGIAAGV RRIEAVTGAA AMAYVAQQQA ELEEAASLLK ADAHSVVTKL KVQLDKMKQL EKEMQQLKDK LAAAASADLA GDAVVVNGVN VLIKKLEGVE AGALRGLQDE LKQKLKSAII VLGVAQEGKV NLIAGVSNDL IAKIKAGELV AMVATQVGGK GGGRPDMAQA GGSQPENLDA ALSQVLPWIT ERLA
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