| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3424 |
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| Symbol | valS |
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| ID | 1171099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 3563491 |
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| End bp | 3566367 |
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| Gene Length | 2877 bp |
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| Protein Length | 958 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637345225 |
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| Product | valyl-tRNA synthetase |
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| Protein accession | NP_718977 |
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| Protein GI | 24374934 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0525] Valyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAAA CATACGATCC TCAGTCCATT GAGCAGACTC TTTACCAAAA CTGGGAAGAG
AAAGGTTATT TTAAACCCCA CGGCGATGCC TCACAGGGCA ACTATTGCAT CATGATCCCG
CCGCCCAACG TGACGGGTAG CCTGCACATG GGTCACGCCT TCCAAGATAC CATCATGGAT
ACCTTGATCC GCTACCAACG TATGAAGGGT AAAAATACCC TGTGGCAGGT CGGTACAGAT
CACGCTGGTA TTGCGACGCA AATGCTGGTT GAGCGTAAGC TTGAAGCTGA AGAAGGCAAG
AGCCGCCATG ATCTTGGTCG TGATGTCTTT ATGGAAAAAG TTTGGGAATG GAAAGCACAA
TCTGGCGGCA CCATCACTAA GCAGCTACGT CGTATGGGCG CATCGGTTGA TTGGGATCGC
GAGCGTTTTA CCATGGATGA AGGTTTGTCA AAAGCCGTTC AAGAAGTGTT TGTCCGTCTC
TACGAAGACG ATTTGATTTA CCGTGGAAAA CGCTTAGTAA ACTGGGATCC TAAACTGCAT
ACCGCAATTT CTGATCTCGA AGTGGAAAAC AAAGAGAAAC AAGGCCATAT GTGGCATCTG
CGTTATCCAC TGGCCGACGG TGAACTGACC GCGGATGGTA AAGATTATTT AGAAGTTGCC
ACCACTCGTC CGGAAACTAT GCTGGGCGAT AGCGCGGTGG CGGTTCACCC TGATGATGAA
CGTTATCAAG CATTGATTGG CAAATATATT CTGCTGCCTA TCGTGAATCG TCGCATCCCA
ATCGTTGCCG ATGATTATGT GGACATGGCT TTTGGTACAG GTTGTGTGAA AATCACTCCT
GCCCACGACT TTAATGACTA TGAAGTTGGT AAGCGCCACA AGCTGCCCAT GTTCAACGTG
TTAACCTTAG ATGCAGCCAT TCGCTCATCA GCAGAAGTGG TTAACACTGA TGGCACCATC
AACACCAGCT TAGATGGCAG CCTACCCGAG CGCTACGCAG GTTTAGATCG TTTCAAAGCC
CGTGATGCCA TCGTTGCCGA ATTTGAAACC TTAGGCCTGC TCGAGAAAAT CGCGCCGCAC
GGCTTAAAAG TGCCCTATGG TGACCGTTCT GGTGTAGTTA TCGAGCCAAT GCTGACCGAC
CAATGGTACG TAGCAGTTGC GCCTATGGCC AAAACCGCAA TCGAAGCCGT TGAAAATGGC
GATATCAAGT TCGTGCCACA GCAGTACGAA AACATGTACT TCTCTTGGAT GCGCGACATT
CAAGATTGGT GTATTTCTCG CCAATTATGG TGGGGGCACC GCATCCCAGC TTGGTACGAC
ACAAACGGTA AGGTCTATGT AGGCCGCACC GAAGCAGAAG TGCGTGCTAA GCACGATATC
GATGATGCAA TCGCCCTACG CCAAGATGAA GATGTATTGG ATACTTGGTT CAGCTCAGCG
CTGTGGACAT TCTCCACCTT AGGCTGGCCT GACAATGTTG AAGATTTAAA AACCTTCCAT
CCAACCGACG TGTTGGTAAC TGGTTTTGAC ATCATCTTCT TCTGGGTTGC CCGTATGATC
ATGATGACCA TGCACTTCAT CAAAGATGAA GATGGTAAAC CACAAGTACC ATTCAAAACC
GTCTACGTGA CGGGTCTTAT CCGCGATGAA GCGGGCAATA AGATGTCAAA ATCTAAGGGC
AATGTACTTG ACCCATTAGA TATGATCGAC GGTATCGATC TTGAAACCCT CGTTGAAAAA
CGTACTGGCA ACATGATGCA GCCTCAGCTA GCCGCCAAGA TCGAAAAGAG CACCCGTAAA
GAATTCGAGA ACGGTATCGA AGCTCACGGT ACTGATGCCC TGCGCTTTAC TCTGGCGGCA
ATGGCCTCAA CGGGCCGTGA TATCAATTGG GACATGAAAC GTTTAGACGG TTACCGCAGC
TTCTGTAACA AGTTATGGAA CGCGTCACGC TACGTGCTGA TGAATACCGA AGGCCAAGAT
TGCGGCCCGA ACTCTCCGGA CTACCAAGGC GGCGAGATGG AACTGTCACT GGCGGATCGC
TGGATCATCG ATTTATTCAA CCAAACCGTA AAAACCTATG ACGAGCACAT GGCAAGCTAC
CGCTTCGATC TCGCAGCTAA CACGTTGTAC GAGTTCACTT GGAATCAGTT CTGCGATTGG
TACTTAGAGT TAACTAAGCC TGTCCTGCAA AACGGCACCG AAGCGCAAAT GCGTGGTACG
CGTCATACGC TGGTCAATGT TTTAGAAGCG ATGCAACGTC TGATGCATCC AATGATGCCG
TACATCACTG AAACCATCTG GCAACGCGTT AAACCGCTGA CTGGCGTCCA AGGTGACACC
ATTATGCTGG CGCCATTCCC TGCATTTGAT GCAGCTAAAG TGGATGCGAC CGCGATGGCC
GACCTCGAGT GGGTTAAGCA AGTGATTGTT GCTGTACGTA ATATCCGTGC AGAGCTCAAT
ATTGCGCCTT CTAAGCCATT AAACGCCTTA TTACGCGGCG TGAGTGCTCA AGATAAAGCC
CGCATTGAAG CTAACCAAGC CTTCTTCGCG ACCTTGGCAC GCTTAGAAAG TATGACGATT
CTAGGTGAAG GTGAAACAGC ACCGATGTCA ACTACGGGTT TGATTGGTGA GATGGAATTA
TTAATTCCGA TGGCAGGTCT GGTTGATGTG GCTGCCGAAA TGGCCCGTAT CGACAAACAA
CTTGAAAAAC TAACCCAAGA AATTGCCCGT ATCGAAGGTA AATTATCCAA TGAAGGTTTC
GTTGCAAAAG CGCCGCCAGC CGTTATTGAT AAAGAGCGCG CCAAAATGGC CGATCTCAGC
CGCGATATTG ACAAGTTAAC AGAGCAAAAA GCGGAATTTG CTAAGTTAGA AGCATAA
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| Protein sequence | MEKTYDPQSI EQTLYQNWEE KGYFKPHGDA SQGNYCIMIP PPNVTGSLHM GHAFQDTIMD
TLIRYQRMKG KNTLWQVGTD HAGIATQMLV ERKLEAEEGK SRHDLGRDVF MEKVWEWKAQ
SGGTITKQLR RMGASVDWDR ERFTMDEGLS KAVQEVFVRL YEDDLIYRGK RLVNWDPKLH
TAISDLEVEN KEKQGHMWHL RYPLADGELT ADGKDYLEVA TTRPETMLGD SAVAVHPDDE
RYQALIGKYI LLPIVNRRIP IVADDYVDMA FGTGCVKITP AHDFNDYEVG KRHKLPMFNV
LTLDAAIRSS AEVVNTDGTI NTSLDGSLPE RYAGLDRFKA RDAIVAEFET LGLLEKIAPH
GLKVPYGDRS GVVIEPMLTD QWYVAVAPMA KTAIEAVENG DIKFVPQQYE NMYFSWMRDI
QDWCISRQLW WGHRIPAWYD TNGKVYVGRT EAEVRAKHDI DDAIALRQDE DVLDTWFSSA
LWTFSTLGWP DNVEDLKTFH PTDVLVTGFD IIFFWVARMI MMTMHFIKDE DGKPQVPFKT
VYVTGLIRDE AGNKMSKSKG NVLDPLDMID GIDLETLVEK RTGNMMQPQL AAKIEKSTRK
EFENGIEAHG TDALRFTLAA MASTGRDINW DMKRLDGYRS FCNKLWNASR YVLMNTEGQD
CGPNSPDYQG GEMELSLADR WIIDLFNQTV KTYDEHMASY RFDLAANTLY EFTWNQFCDW
YLELTKPVLQ NGTEAQMRGT RHTLVNVLEA MQRLMHPMMP YITETIWQRV KPLTGVQGDT
IMLAPFPAFD AAKVDATAMA DLEWVKQVIV AVRNIRAELN IAPSKPLNAL LRGVSAQDKA
RIEANQAFFA TLARLESMTI LGEGETAPMS TTGLIGEMEL LIPMAGLVDV AAEMARIDKQ
LEKLTQEIAR IEGKLSNEGF VAKAPPAVID KERAKMADLS RDIDKLTEQK AEFAKLEA
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