Gene SO_3417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3417 
SymbolslyD 
ID1171091 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp3558317 
End bp3558985 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content50% 
IMG OID637345217 
Productpeptidyl-prolyl cis-trans isomerase SlyD 
Protein accessionNP_718970 
Protein GI24374927 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1047] FKBP-type peptidyl-prolyl cis-trans isomerases 2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATCA CCCAACACAG TGCGGTAACC ATTCATTACC GTTTATCAGA TCAAGAAGGC 
AGACTTTTAG AAAACTCTTT TGATGCCGAA CCTATGCTCT ATCTGCATGG TACAGAAAAC 
CTGATCCCAG GATTAGAAGC CGCATTAGAA GGTAAAGCCA AGGGCGAAAA ACTGGACGTA 
ACGATCAGCG CCGAAGAGGC CTATGGCCCA TACCATGATG GTCTACGCCA AGCGGTACCA 
TTAGAAGCAT TCGGTGATAT CGAAGATATC GTGCCAGGTA TGCGCTTTAT TGCCGAAACC 
GAAATGGGTC AGCGTCCAGT TCAAGTTGTT GAAGTAAAAG ACGATGTTGT GATCGTTGAT 
GGTAACCACC CATTAGCGGG CCAAGCACTC AGTTTTAACA TTGAAATCAT CGATGTGCGT 
GAAGCGACAG CGGAAGAAAT TGCCCATGGC CATATTCATG CCCACGGCGG ATGCGGTGGC 
CATGGACATA GCCATGATCA CAGCCATGGC GGCGGATGCT GTGGCGGTTC AGGCAATGAT 
GCTGGTGGCT GTTGTGGTGG CTCTGATGAC CATGACCATG ACCATCACCA CCATGACCAT 
GATCACGAAG CTTGTGACAC ACCCAAAGCG GGTTGTGATG GCAACGGTGG TTGCGGCTGC 
CGCGGCTAA
 
Protein sequence
MKITQHSAVT IHYRLSDQEG RLLENSFDAE PMLYLHGTEN LIPGLEAALE GKAKGEKLDV 
TISAEEAYGP YHDGLRQAVP LEAFGDIEDI VPGMRFIAET EMGQRPVQVV EVKDDVVIVD 
GNHPLAGQAL SFNIEIIDVR EATAEEIAHG HIHAHGGCGG HGHSHDHSHG GGCCGGSGND 
AGGCCGGSDD HDHDHHHHDH DHEACDTPKA GCDGNGGCGC RG