| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3411 |
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| Symbol | |
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| ID | 1171086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3547932 |
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| End bp | 3551216 |
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| Gene Length | 3285 bp |
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| Protein Length | 1094 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637345212 |
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| Product | protease, putative |
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| Protein accession | NP_718964 |
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| Protein GI | 24374921 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4946] Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTTC GTCACTCAGT TGCCTGCTGC ATGCTCGCCC TCGGCACTTT GTCTGCAGCT
CAAGTGTTTG CAGCACAATC GACTAGCAAT CAAGGTTATT ACCGTGCTCC GGCTTTACAT
GACCAGACCT TAGTGTTTAC GGCTGAAGGG GATCTTTGGA CGCAAACCCT CGGCCAAAAG
GCGGCGACGC GGTTGACCAC CTTACCAGCT GAAGAACTCG GCGCGGCAAT TTCTGCCGAT
GGTAAATGGG TGGCCTATGT GGCGAATTAC GAAGGTGCGA GTGAGGTTTA TGTTATTCCC
GTGACTGGCG GTGTCGCAAA ACGGGTGAGT TTTGAGAATA GCCGAGTGCG AGTGCAAGGG
TGGACCTCTA AGGGAGAAGT GCTTTATTCC ACCGACGCTG GTTTTGGCCC CGCGAATAAT
TGGATGTTGC GTCTTGTTAA TCCCGAGAGT TTAACCACAA CCGATCTGCC CTTGGCCGAT
GCGGTGGAAG GGGTGATCGA TGCCAATCAT CAGTATGTTT ATTTTACCCG TTTCGGCCTG
CAGGTGACGG GTGACAATGC GAAGGTGTAT CGCGGCGGGG CTAAGGGCGA ATTATGGCGC
TTTAAACTGG GTGGTAAAGA CGAGGCGCAG TTACTCAGTG GACAGCACCA AGGCTCTGTC
CGCCAGCCGA TGCTATGGCA GGACCGACTC TATTTTATTA GCGATAGCGA TGGTAACGAC
AATCTCTGGT CAATGGCCCT TGATGGTAGT GATGCTAAAC AGCTAACCCA ATATAAAGAT
TGGCAAATGC GCGGGGCGCG CATGGACCAA GGTAACGTTG TCTTTCAACT AGGGGCGGAT
ATTCATGTTT TTGATATCGC CTCTGCTAAG GATTCATTAT TAAACATTGA ATTAATTTCA
GATTTTGCCC AGCGCCGCGA ACATTGGGTA AAAGATCCTA TGGATTATGC TACCTCCGCT
AATCTTGCCC TTGCTGGCGA TAAAGTCGTT ATTACTGCCC GTAGCCATGT GGCTATTACT
GGGATTGATG GCTCGCGGTT AGTGCAAGTG GCGCTTCCTG GTACTTACAG AGTACGAAAT
GCCATCCTGA GTCAGGATGG CAAATCGGTT TATGCCATCA GCGATATGAC TGGCCAGCAG
GAAATTTGGC AATTTCCTGC TGATGGAACC AGTGGTGCTA AACAGTTGAC CAAGGATGGC
CATACCTTAA GAATGTCGCT GAGTTTATCT AACGATGGTC GCTATCTTGC CCATGACGAT
AACGACGGTA GTGTGTGGTT ATTGGATCTA AAGAAAAATA CCAATCAAAA AATCATTAGT
AATGGTGAAG GCCTTGGTCC CTATGCCGAT ATCCGTTGGT CCGGCGACAG CCGTTTTATC
GCACTAACTA AATCTGAAAT CGGTAAGCAA AGGTCGCAAG TCGTGCTTTA TTCGGTGGAT
GAAAATAAGG CGCAAGCGCT CACCAGCGAT AAATATGAAT CCTATTCGCC GACCTTTAGC
AGCGATGGCC AGTGGTTATA TTTCCTTTCT AATCGCCAGT TTACCGCAAC CCCAAGCTCG
CCTTGGGGGG ATCGCAATAT GGGGCCCGTT TTTGATAAAC GTAGCCAGAT TTTTGCGATT
TCTTTAGTGA AAAATGCCAA GTTCCCCTTC AGCAAACCAA CTGAGTTGAC GGCAAAAACG
GCTGAAAAAG CCGAATCGAA AGATAAACCG ACTCCCGTAA AAATTGATTG GGCGGGGATC
AGTGAGCGTC TATGGCAAGT CCCAGTCGAT TCAGGCAATT ATAGCCAGCT ATCTGCTATT
GAAGATCGTT TGTATGTACT TGACCAAGCT ATTGGTGACG AAAGCCAACC TAACCTCATG
ACGGTTAAGT TTACCGAGCA GCGTCCTAAA GCTGAGGTGT TTGCTGAAGA TGTGGCTAAC
TACAGTGTCT CAGCTGACGG TAAGAAGTTG TTACTGCGCA AAAAAAGCAA TGAAAAGTCG
CTGATAATTG TTGATGTGGG CGATAAGTTG GGTGATACCG ACAATGCCAA GGTACAGACT
GACCAGTGGC AATTAGTAAT TTCGCCAACC TTAGAGTGGC AACAAATGTT TGAAGATGCA
TGGTTAATGC ATCGAGATTC TTTCTTTGAC AAAAATATGC GCGGTCTCGA TTGGCTGGCG
ACTAAGGCCA AGTATCAACC ACTGCTCGAT CGCTTAACTG ACCGTAATGA ATTAAACGAC
ATCTTTATGC AGATGATGGG CGAGTTAGAT TCACTGCACT CGCAAGTGCG TGGCGGTGAT
TTGCCTAAAG ATCCTGATGC TGCGAAAGGG GCGAGTTTAG GCGCGCGGCT GCAACAAACC
AGCGATGGGG TGAAAATTGC CCATATTTAT CGTAATGATC CCGAACTGCC GAGCCAAGCT
TCACCCCTAA GCCGTATCGA AGTCGATGCC AAAAAGGGCG ATCAGTTACT TGCCATTAAT
GGCACGCCTG TGACCAATGT TGCCGACGTG ACGCGTTTAT TACGTAATCA GCAGGATAAA
CAGGTTCTGC TAGAGCTTAA GCGCGGCGGG CAAAGCCATA AAACTGTGGT AATGCCAGTT
AGCACTATGG TCGATAGTCA GTTACGTTAT TTAGATTGGG TCAACCATAA TGCCAGCGTT
GTGACTGAGG CGAGTAAGGG CAAGATTGGT TATCTGCACT TATATGCCAT GGGCGGCGGC
GATATTGAGA GCTTCGCCCG TGAGTTTTAC ACCAACTATG ACAAAGACGG TTTGATTATC
GACGTACGTC GTAACCGCGG CGGTAATATT GATAGCTGGA TCATCGAAAA ATTATTACGC
CGAGCTTGGG CTTTCTGGCA GCCAACCCAT GGCACGCCCA ATACCAATAT GCAGCAAACC
TTCCGTGGGC ATTTAGTGGT GTTAACGGAC GAGCTGACCT ACTCCGATGG CGAAACTTTC
TCTGCGGGGA TCAAGGCACT AGGAATTGCA CCGCTGATCG GTAAACAAAC TGCCGGGGCG
GGTGTATGGC TATCGGGTCG TAATACCTTA ACCGATAAAG GGATGGCGCG AGTTGCTGAA
TATCCACAAT ATGCCATGGA TGGACGCTGG ATTCTTGAGG GACATGGTGT TACGCCGGAT
ATTGAGGTCG ATAACTTACC CTTTGCCACT TTTAATGGCC AAGATGCACA GCTTGAAACC
GCCATTAGTT ATCTGAAGGA TGAGTTAATA AAGCAGCCGA TTCCTGCATT GAAGGCACAA
CCAATGCCAG CTAAAGGTAT GGCAGAAGAT ATAAAAGCTA AGTAG
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| Protein sequence | MKLRHSVACC MLALGTLSAA QVFAAQSTSN QGYYRAPALH DQTLVFTAEG DLWTQTLGQK
AATRLTTLPA EELGAAISAD GKWVAYVANY EGASEVYVIP VTGGVAKRVS FENSRVRVQG
WTSKGEVLYS TDAGFGPANN WMLRLVNPES LTTTDLPLAD AVEGVIDANH QYVYFTRFGL
QVTGDNAKVY RGGAKGELWR FKLGGKDEAQ LLSGQHQGSV RQPMLWQDRL YFISDSDGND
NLWSMALDGS DAKQLTQYKD WQMRGARMDQ GNVVFQLGAD IHVFDIASAK DSLLNIELIS
DFAQRREHWV KDPMDYATSA NLALAGDKVV ITARSHVAIT GIDGSRLVQV ALPGTYRVRN
AILSQDGKSV YAISDMTGQQ EIWQFPADGT SGAKQLTKDG HTLRMSLSLS NDGRYLAHDD
NDGSVWLLDL KKNTNQKIIS NGEGLGPYAD IRWSGDSRFI ALTKSEIGKQ RSQVVLYSVD
ENKAQALTSD KYESYSPTFS SDGQWLYFLS NRQFTATPSS PWGDRNMGPV FDKRSQIFAI
SLVKNAKFPF SKPTELTAKT AEKAESKDKP TPVKIDWAGI SERLWQVPVD SGNYSQLSAI
EDRLYVLDQA IGDESQPNLM TVKFTEQRPK AEVFAEDVAN YSVSADGKKL LLRKKSNEKS
LIIVDVGDKL GDTDNAKVQT DQWQLVISPT LEWQQMFEDA WLMHRDSFFD KNMRGLDWLA
TKAKYQPLLD RLTDRNELND IFMQMMGELD SLHSQVRGGD LPKDPDAAKG ASLGARLQQT
SDGVKIAHIY RNDPELPSQA SPLSRIEVDA KKGDQLLAIN GTPVTNVADV TRLLRNQQDK
QVLLELKRGG QSHKTVVMPV STMVDSQLRY LDWVNHNASV VTEASKGKIG YLHLYAMGGG
DIESFAREFY TNYDKDGLII DVRRNRGGNI DSWIIEKLLR RAWAFWQPTH GTPNTNMQQT
FRGHLVVLTD ELTYSDGETF SAGIKALGIA PLIGKQTAGA GVWLSGRNTL TDKGMARVAE
YPQYAMDGRW ILEGHGVTPD IEVDNLPFAT FNGQDAQLET AISYLKDELI KQPIPALKAQ
PMPAKGMAED IKAK
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