| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3403 |
|---|
| Symbol | yfiA-1 |
|---|
| ID | 1171079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 3541770 |
|---|
| End bp | 3542126 |
|---|
| Gene Length | 357 bp |
|---|
| Protein Length | 118 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637345205 |
|---|
| Product | ribosomal subunit interface protein |
|---|
| Protein accession | NP_718956 |
|---|
| Protein GI | 24374913 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
|---|
| TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA ATCTTTCTGG TCACCATGTC GATGTTACTG ATTCTGTAAA AGAACACGTT
AACGAAAAGT TTTCTAAAAT CGCCACTCAT TTCCCCACAC TCATCGGGCT CGATATCATT
ATTGCTAAGG AGCATGGCGA GTTTCAGGTT GAAATTCGAA CAAATTACGA AGGCAGTCGC
ATCTCCGCCT CTGGTACGGA TGAAGTCATG TATCCCGCGA TTGCAAACGC CGCCAAAAAA
CTTGATGCAG CACTTAAACA TCGCAAAGGT CAGCTAAAGG CGGATTTACA TGAAAAACCG
ACTTGCACTA CGCCACCTAT TGCCCATGAA ATCATCCAAG AGATGGATTT GCGCTAG
|
|---|
| Protein sequence | MKINLSGHHV DVTDSVKEHV NEKFSKIATH FPTLIGLDII IAKEHGEFQV EIRTNYEGSR
ISASGTDEVM YPAIANAAKK LDAALKHRKG QLKADLHEKP TCTTPPIAHE IIQEMDLR
|
|---|
| |