| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3389 |
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| Symbol | |
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| ID | 1171067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3527778 |
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| End bp | 3530417 |
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| Gene Length | 2640 bp |
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| Protein Length | 879 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637345194 |
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| Product | sensory box protein |
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| Protein accession | NP_718943 |
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| Protein GI | 24374900 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGATT GTGCAATTTC ACAAAAGCAG TTAACAGATT GGGCAAATGA CTTACAGTTG
GTTGCCGATA TCACTCAGTC ATATGCGGTG ATTTTAAAAG TGAATGCAGC AGGTGAATAT
CGTCAGTTAA TCCAGTCTGA ACTGTGCCAA CAAGATGATA TTGAAGCACT AATACGGCAT
TTTAATCATA AAGCACATTT AAACCTTTAC CAAAACGCCA CGCCTAAAGT TAATACCTCA
TCTACCCGCG CCGCTCCCCA TAATCCTTTC AACGAATCAA GCACCTTTAG CCAGTACCAG
GTCAATCTTC CAGTGGATGT GCGCCATGCT GCTGCATATC AACAGGCGTT GATCCCAGAT
GTAAAAGCGA TGCCCCAGTG GCGTGATGCA GGGCTTGGAA GCTTGATTTA TCTGCCCATT
ATCTGGAGTT CTGGCGCGCA TTTTGGCGTA TTTTGTTTAT ATCATAAGGC GGCTTTGCAG
TTAGATGATA AGGCGCTGCA ACTCGCATCC CTTACTGTAA ATAGTCTGCA GCTTAATTTG
AGCGAGTTGC ATAGAGCGCA ACGACAACAA ATGACCGTGT TACGCGGTGA TGCACAATCG
ATTGATATTA TTGACTTACA AACCTTTATC GACAGTTTTG AAGAGCATAT TTGGGTCAAA
AATACCGAGG GTGTTTATAC CATTTGCAAC CAAAGTGTTG AAAAAGCTTG GGATTTACCC
CGCAGTGACA TTGTCGGCAA GACGGACGAA GATTTATTTG GCAAAGCGAT TGCAGATATT
TTTCTCAATG GTGACAGGCT CGCCATTGAG GCTGGGGCGC CGATTATTGT TGCTGAATGT
TTGGATGGTG AAAATAAAAA CAACCACCTA TGGCTTGAAA CCCTCAAACT CCCCGCCTTA
ACGCCCGATG GAGAATTGGC GGGGGTGATA GGCATGACCC GTAATATCTC TAAACATAAA
GAAGTGGAAG AACAACTTAC CCTCGCCACC AATGTTTTTA AACACTCCTT CGAAGGTGTC
GTGGTGACAG ATAGGCACGG TAATATTACC GATGTTAATG GTGCCTTTTA TGAGATCACG
GGGTACTCGC GGGAAGAGTT ACTTGGGCAA AATCCACGCT TATTTAATTC TGGCCGCCAC
GAGAAAGCCT TTTTTGAAAC CATGTGGAAT AACTTACTCG GAGGCGGTAA GTGGAATGGT
GAAATTTGGA ATCGGCGTAA AGACGGCACT ATTTTTCCGC AAAATATCAC GATCAGTGCC
ATTTATGATG AGGTGGGGGA GATCCGCTAT TTTGTCGCAG TATTTGCCGA TATCTCCGCT
CAAAAACAGA GTGAAGCGCA GCTTGCTCAT TTAGCTTATT TTGATCCACT TACCCACTTA
CCTAATCGCA TGAAGTTGAT GATACAGCTT AAGCAAGAAA TTATGCATGC GAAAAGGCTT
AATTCACAGT TAGCGACAGT CTTTATCGAT GTCGATTTGT TTAAACACAT TAATGACAGT
TTTGGCCATA GCATTGGCGA TGAAATGCTG GTGGAACTTG CAAAGCGCCT TCGTAGCCAG
TTGCAAGAGC AAGACGTGTT GTCACGGATT GGTAGCGATG AGTTTGTGGC GCTGATCTCG
GGCATTCAAT ATCATGAGGA TGCAACCGCG GCAATTAACC AATTACGACA AGTGTTTGAG
CAGCCCTTTG TGGTAAGCAC TGGGGATCAT TTGCGTTTAA CCGCCACCAT GGGAGTATCC
CTCTACCCAA GTGATGGGAG TAACGCCGAT ACGCTGTTAC GCAATGCTGA TGCTGCCATG
TATCGTGCTA AGAGTGAGGG GCGAAATAAC TATGCCTTTT ACACTGAATC GTTAACCAAA
GAGTCAATCG AACATTTAAA ATTGCAGAGT GCGCTCTATG GTGCGCTTGA GCAAAATGCG
TTGTATTTGA TGTATCAGCC CAAAGTGGAT CTAGTGACCC GTAAAACTGT TGGTGTTGAG
GCGCTATTGC GTTGGAACGA TCCGATTTTA GGGCAAATTT CGCCGAGTGT GTTTATTCCC
GTCGCCGAGA AAAGTGGCTT AATTTACGAT ATTGGTTTGT GGGTGCTTGA AACCGCCTGT
CAGCAAGGCG TGCATTGGTT GGCCGCGGGT AAACAGTTTG GTCGGATTGC GGTTAACGTC
GCAGGGCAGC AGTTGCAACG CAACTCCTTT GTAGAGGATG TAAAACGTAT CCTAACGCAA
ACTGGCTTAC CTGCCACTTG TCTGGAGCTT GAAGTGACTG AAAGCGTGAT GATGAACAAT
CCAGATGTTG CGATACGTGA TTTAAAATTG TTAGGCGATC TGGGCATCGT GCTTTCAGTG
GATGATTTTG GTACAGGTTA TTCATCACTT AATTATTTGA AAAAGCTTCC CATTCATAAG
CTTAAAATCG ATCAGTCCTT CGTTCGCGAT ATTCCCTTCG ATACCAACAA TACCGCCATT
GCTAAAGCGG TGATTGTACT TGGCCATGCT TTAAAGTTAG AAATCGTGGC TGAAGGCGTC
GAAACTGCTG AGCAAGCCGA CTTTTTAACT CAAAACCTTT GCGATCAAGC ACAGGGTTAT
CTCTTTAGTC GCCCACAATT ACCGGCGGAT GTTGAGGCCT TTTTTACCAA ACTTAAGTAA
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| Protein sequence | MIDCAISQKQ LTDWANDLQL VADITQSYAV ILKVNAAGEY RQLIQSELCQ QDDIEALIRH
FNHKAHLNLY QNATPKVNTS STRAAPHNPF NESSTFSQYQ VNLPVDVRHA AAYQQALIPD
VKAMPQWRDA GLGSLIYLPI IWSSGAHFGV FCLYHKAALQ LDDKALQLAS LTVNSLQLNL
SELHRAQRQQ MTVLRGDAQS IDIIDLQTFI DSFEEHIWVK NTEGVYTICN QSVEKAWDLP
RSDIVGKTDE DLFGKAIADI FLNGDRLAIE AGAPIIVAEC LDGENKNNHL WLETLKLPAL
TPDGELAGVI GMTRNISKHK EVEEQLTLAT NVFKHSFEGV VVTDRHGNIT DVNGAFYEIT
GYSREELLGQ NPRLFNSGRH EKAFFETMWN NLLGGGKWNG EIWNRRKDGT IFPQNITISA
IYDEVGEIRY FVAVFADISA QKQSEAQLAH LAYFDPLTHL PNRMKLMIQL KQEIMHAKRL
NSQLATVFID VDLFKHINDS FGHSIGDEML VELAKRLRSQ LQEQDVLSRI GSDEFVALIS
GIQYHEDATA AINQLRQVFE QPFVVSTGDH LRLTATMGVS LYPSDGSNAD TLLRNADAAM
YRAKSEGRNN YAFYTESLTK ESIEHLKLQS ALYGALEQNA LYLMYQPKVD LVTRKTVGVE
ALLRWNDPIL GQISPSVFIP VAEKSGLIYD IGLWVLETAC QQGVHWLAAG KQFGRIAVNV
AGQQLQRNSF VEDVKRILTQ TGLPATCLEL EVTESVMMNN PDVAIRDLKL LGDLGIVLSV
DDFGTGYSSL NYLKKLPIHK LKIDQSFVRD IPFDTNNTAI AKAVIVLGHA LKLEIVAEGV
ETAEQADFLT QNLCDQAQGY LFSRPQLPAD VEAFFTKLK
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