| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3350 |
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| Symbol | pilU |
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| ID | 1171032 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3494869 |
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| End bp | 3495981 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637345155 |
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| Product | twitching motility protein PilU |
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| Protein accession | NP_718904 |
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| Protein GI | 24374861 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATGTCC GTCCGTTTTT AAAAGTCATG GTGGAGCGTA AAGCCTCGGA CTTGTTTATT
ACCGCAGGTT TTCCGCCGAG CGCCAAAATC GATGGTGAGT TACGTCCACT TGCTGAGAGT
ATATTTACGC CTGCACAATC GTTAGATTTT GTTGAGTCCG TGATGACCGA GGCACAGAAA
AAGGAATTTC ACACTACCCG TGAATGTAAC TTTGCATTTG CCGTTAAAGA GTTAGGGCGT
TTTCGTGTGA GTGCATTTTG GCAGCGTGAA TCTCCTGGCT GTGTAATGCG GCGGATTGAG
ACTAAAATCC CAGAAGTCGA TGACTTAAAA CTGCCGCCCA TATTAAAAGA TCTGGTGATG
AGTAAGCGTG GACTTATCAT CATGGTGGGG GGAACGGGTA CAGGTAAGTC GACCTCCTTG
GCGGCGTTAG TGGGTTATCG TAATTCCCAT GCCCGTGGGC ATATTCTGAC CATTGAAGAT
CCGGTGGAGT TTGTTCACGA TCATCGAAAA AGTATCATTA CTCAACGTGA GGTGGGGATT
GATACAGAGT CCTTTGACGC AGCGCTAAAG AGTTCATTGC GTCAGGCGCC CGATGTGATT
CTCATTGGTG AAATTCGCAC CCAAGAAACC ATGGAATTTG CGCTCTCCTT CGCTGAAACA
GGCCATCTGT GTATGGCAAC ACTGCACGCC AACAACGCCA ACCAAGCCTT AGATCGGATT
ATGCATTTAG TCCCAGAGAG TAAACACCAA CAGCTATTAT TCGATTTGTC ACTCAACCTT
CGTGGTATTG TGGCGCAGCA ACTGGTACCC AAGGTCGATG GTACAGGACG GCGGGCAGCT
ATTGAGGTAT TGATCAATAC CCCAAGGGTG GCAAGCTTGA TTGCTAAAAA TGAGCTGCAT
TTACTCAAAG AAACCATGGC GAAATCCAAC GAGCAAGGAA TGCAGACCTT CGACCAAGCC
TTGTTACAGC TTTATGTTGA CGGGGAAATC AGTTACGCCG ATGCGCTTCA CCATGCTGAC
TCACCAAACG ACTTGCGCTT GATGATCAAA CTGCAAAATA AAGAACCTCC CAGTTCGAGT
TTTATGGAAG GCGTGACCTT GGATATGGAT TAA
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| Protein sequence | MDVRPFLKVM VERKASDLFI TAGFPPSAKI DGELRPLAES IFTPAQSLDF VESVMTEAQK
KEFHTTRECN FAFAVKELGR FRVSAFWQRE SPGCVMRRIE TKIPEVDDLK LPPILKDLVM
SKRGLIIMVG GTGTGKSTSL AALVGYRNSH ARGHILTIED PVEFVHDHRK SIITQREVGI
DTESFDAALK SSLRQAPDVI LIGEIRTQET MEFALSFAET GHLCMATLHA NNANQALDRI
MHLVPESKHQ QLLFDLSLNL RGIVAQQLVP KVDGTGRRAA IEVLINTPRV ASLIAKNELH
LLKETMAKSN EQGMQTFDQA LLQLYVDGEI SYADALHHAD SPNDLRLMIK LQNKEPPSSS
FMEGVTLDMD
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