Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3338 |
Symbol | ybjU |
ID | 1171020 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3485677 |
End bp | 3486690 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637345143 |
Product | L-allo-threonine aldolase |
Protein accession | NP_718892 |
Protein GI | 24374849 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2008] Threonine aldolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGATT TGCGCAGTGA TACCGTGACC CAGCCAACTG AGGCGATGCG TTTAGCCATG TCTAGGGCAG AAGTGGGCGA CGATGTTTAT GGTGATGATC CGACCGTGAA CAGTTTGCAG GACATGGCCG CCGAGATGTT TGGTTTTGAG AGCGCTCTTT TTACGGCATC GGGCACTCAA GCCAATTTGC TCGCACTGAT GGCGCATTGC GAGCGTGGGG ATGAATATTT ATGTGGTCAG CAGGCCCATA ACTACAAATT TGAAGGTGGT GGCGCGGCGG TATTGGGTAG CATTCAACCA CAACCGTTGA CGAATCAACT GGATGGCACT ATTGCCCTTA CTGATGTTGA AGCAGCCATC AAGCCCGATG ATATTCATTT TGCCCGCACA CGCTTACTGA GTTTAGAAAA TACTATTGGG GGGAAAGTGT TGTCGCAGGC CTATCTTGCC AATGCGCAGG CGTTGGCTTT TCAACGTGGT TTAAAAATTC ATTTAGATGG TGCAAGGGTG GCCAATGCTG CAGTAGCACA AGGTATTGCT ATTGCTGATA TAGCAGCGCA TTTTGATTCA GTTTCCATTT GTTTATCAAA AGGATTATGT GCGCCAGTAG GGTCGTTACT CTTAGGGGAT GAACGCCTGA TTAAAAAAGC GACACGTTGG CGAAAAATGC TTGGTGGCGG TATGCGTCAA GCGGGTATTT TAGCGGCGGC TGGCAAGTTA GCCTTAACTG AACAAGTTGA AAGACTTGCA GAAGATCATG AAAATGCGGC TTATCTGGCT CAGCAGTTAA GCCAGTTGGA TGAGTTTGAC ATTGACTTAG CCTCAGTTCA AACCAATATG GTGTTTGCAA CATTGGCATC CCATGTCGAT GAACAGGCCT TAGTGAAACG CTGTCGTGGC GAGGGCATTC TGATTAGTCC TGGACGTACC TTACGTTTTG TTACCCATAA AGATGTCTCG CGTCAGGATA TTGATAAGGT ATTGCAGGTA TTTAAATTAC ATCTGCAGGC GTAA
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Protein sequence | MIDLRSDTVT QPTEAMRLAM SRAEVGDDVY GDDPTVNSLQ DMAAEMFGFE SALFTASGTQ ANLLALMAHC ERGDEYLCGQ QAHNYKFEGG GAAVLGSIQP QPLTNQLDGT IALTDVEAAI KPDDIHFART RLLSLENTIG GKVLSQAYLA NAQALAFQRG LKIHLDGARV ANAAVAQGIA IADIAAHFDS VSICLSKGLC APVGSLLLGD ERLIKKATRW RKMLGGGMRQ AGILAAAGKL ALTEQVERLA EDHENAAYLA QQLSQLDEFD IDLASVQTNM VFATLASHVD EQALVKRCRG EGILISPGRT LRFVTHKDVS RQDIDKVLQV FKLHLQA
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