| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3334 |
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| Symbol | |
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| ID | 1171016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 3480763 |
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| End bp | 3482487 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637345139 |
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| Product | GGDEF family protein |
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| Protein accession | NP_718888 |
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| Protein GI | 24374845 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTCAA AACGACTCAC CAGTCTTAAA TATAAAATTA CGCTAGCCTT CTACATCATC
CTCGGCATGG CAATAGTCAA TGGCATTATC GCTATCCTAT TGTCACAAAA ATTAAAAACT
GAAATTGAAC AACTGGTAAA TAGCGAGGCA GTCAAAGTGA CGACTGCATT GCAATTGGCT
AAAAATAGCG AAAGATTGCA AATTATTACC ACTGAATTAA ATCATTATGA TACTGAAGAG
CAACGACTTA CTCTTCTTAA GGAATTGACC ACCCAATGGG AATATTTGTT AAAAGACACC
AAAGTATTAT TTAGTCTCGA AACCACACCC AATACCCATC AAGCACTAAA TCGTACGATT
GACACTCAGC TTTATTTTCA GCAGCAACTC CCCTTGCTTG ATACCCTCAC GGATAGCGCG
TTACAAGCCA AATTACAGGC ACAAAACATT CAAGCTAATT TAGCCGGAAT GTCATCTGCA
TTTTCCGATG AGATACAAGC TCAACTCAAC CTAACTCACG AGCACTTCCA TCTGTTACTC
GAACAAAAAA ATCTTGATGG AATCTCCGAT AACCTTAACC AACATCAAGC ACTCTCCGCA
TATTTTCATC AAGGTGAGCA TCTCTTTGCG TTATTAGAAG AGGTAAAAAA TTCCCAGAAT
ATTGTGGAAA TAAATCGACT CCAACGGGAA GCTATGCGCC TACTGATCCA GATGGAAGAG
ATCGTCGCCT CAATGCATAC AAGCGATAGT ATTTACCTCG AGTGGCTATC TCAAATAAAA
CAAAATATGG CTGGTAATGA CAACCTATTT GAATTGTCAC GTAATGCCTT AAAAAGCACT
CAAATTGCCA ATGCCCACTT TGGCTTTCAA GCCAAGGCAG CACAAGAAAT AGCGACATTC
ACCCAAGAGT TAGTCGACCA TGCTGAAGAA GAAATTAAGA TCGCAGGCAC CAATCTTAAG
AGTGATAGTA CTTCCTTTGT GATCCTGATT TTTTGTGGCG GTATTCTCTA TTGCTTTTTT
ATCTGGCTCA CCAGTTGGCA TTTTATGGCG AAGGGCATCA TCAAACCCGT TATTGCAACC
CGTGATGCAA TGAATGCTAT CGCCAATGAA AAACTAGACA CCCAAATGCC CACCACCGAC
AACCTAGAGC TTCAACAAAT GGTGAGCTCG CTTGAGACAC TTAAAACCTA CGCGGCTCAG
GTTAAAACCA TGGCTGAAAC CGATGGATTA ACTGGTTGCT ATAATCGCCG CTATTTGGAC
AATCAAATAC TGAAGGAGTT GAGTTACGCA AACGATCACA ATATGCCCTT GAGTATTGTG
ATGTTCGATT TGGATAACTT TAAAGAATTC AATGATCAAT ACGGACACGT CAACGGCGAT
CAATGTTTAC GACAAATCGT CAACGCGGCC AAATCAATTC TACAGAGACC AACGGATATC
CTCGCACGCT ATGGCGGTGA AGAGTTTATG CTACTTTTGC CCTCAAGCCA TATTGAAGAT
GCCTACAAAA TTGCCGAACG CCTGCGCGAA ACTGTTATCG ACTTGCATAT TATCCACCAA
GGCTCATCGC ACTCGGGAAT TGTCACTATC AGTTTAGGAG TGGCCTGCTG GCAACCGCCA
GAATCATTCG ATGTTAATAA GCTTATAAGC CATGTTGACG AAGCGCTCTA TCGTGCCAAA
CTGGCCGGAC GAAATCGCAC AGAAGTCTTT ATCGACGCTC GATAA
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| Protein sequence | MNSKRLTSLK YKITLAFYII LGMAIVNGII AILLSQKLKT EIEQLVNSEA VKVTTALQLA
KNSERLQIIT TELNHYDTEE QRLTLLKELT TQWEYLLKDT KVLFSLETTP NTHQALNRTI
DTQLYFQQQL PLLDTLTDSA LQAKLQAQNI QANLAGMSSA FSDEIQAQLN LTHEHFHLLL
EQKNLDGISD NLNQHQALSA YFHQGEHLFA LLEEVKNSQN IVEINRLQRE AMRLLIQMEE
IVASMHTSDS IYLEWLSQIK QNMAGNDNLF ELSRNALKST QIANAHFGFQ AKAAQEIATF
TQELVDHAEE EIKIAGTNLK SDSTSFVILI FCGGILYCFF IWLTSWHFMA KGIIKPVIAT
RDAMNAIANE KLDTQMPTTD NLELQQMVSS LETLKTYAAQ VKTMAETDGL TGCYNRRYLD
NQILKELSYA NDHNMPLSIV MFDLDNFKEF NDQYGHVNGD QCLRQIVNAA KSILQRPTDI
LARYGGEEFM LLLPSSHIED AYKIAERLRE TVIDLHIIHQ GSSHSGIVTI SLGVACWQPP
ESFDVNKLIS HVDEALYRAK LAGRNRTEVF IDAR
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