Gene SO_3312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3312 
SymbolispG 
ID1170997 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3463790 
End bp3464905 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content49% 
IMG OID637345120 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionNP_718866 
Protein GI24374823 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATAACG AAACCCCCAT AAAGAGACGT CCTTCAACCC GCATTTATGT GGGTAATGTG 
CCCATCGGTG ATGGTGCACC GATTGCTGTG CAGTCAATGA CTAACACTAA GACCACCGAC 
GTTGAGGCGA CTGTTGCCCA GATTCGTGCC TTAGAGAAAG TTGGGGCCGA TATTGTGCGT 
GTGTCTGTGC CAACGATGGA CGCTGCTGAA GCCTTTAAAC TGATTAAGCA ATCTGTCTCT 
GTACCCTTAG TTGCGGATAT CCATTTTGAT TACCGCATCG CCTTAAAAGT GGCGGAGTAC 
GGGGTGGATT GTTTGCGGAT TAACCCCGGC AACATTGGTA ACGAAGAACG TATCCGCAGT 
GTTGTTGAAT GCGCTCGTGA TAAAAATATT CCAATTCGTA TCGGTGTTAA TGGCGGTTCA 
TTAGAGAAAG ATCTGATGGA CAAATACAAA GAACCCACGC CAGAAGCCCT GCTCGAATCG 
GCTATGCGCC ATGTGGATAT TCTTGACCGT TTGAACTTTG ATCAATTCAA GGTCAGTGTC 
AAAGCCTCCG ATGTGTTCTT AGCGGTTGAA TCCTACCGTT TATTAGCCAA GCAAATTCGC 
CAGCCATTGC ACTTAGGCAT TACCGAAGCC GGTGGCGCGC GGGCGGGGGC GGTGAAATCA 
GCCGTCGGTT TAGGCATGCT GCTCGCCGAA GGTATTGGTG ATACCTTGCG AATTTCCTTA 
GCGGCCGATC CGGTGGAAGA AATCAAAGTC GGCTTTGATA TTTTAAAATC ACTGCGTATT 
CGTAGCCGTG GCATTAACTT TATCGCTTGT CCTTCGTGCT CGCGCCAAGA GTTTGATGTG 
ATAAGCACAG TTAACGAGCT AGAACGCCGC CTCGAAGATG TGACCACCGC GATGGATGTG 
TCGATCATCG GCTGTGTGGT CAATGGCCCA GGCGAAGCCT TAGTGTCACA CATTGGCTTA 
ACGGGCGGAC ATCGTAAGAG TGGTTACTAC GATGAGGGCG AGCGTCAAAA AGAGCGTTTC 
GACAATGACA ACTTAGTCGA TTCCCTCGAG GCGAAAATTC GCGCTAAAGC GAGCCAAATG 
GCAAATCGCA TTCAAGTTAA AGACACGACT GAGTAA
 
Protein sequence
MYNETPIKRR PSTRIYVGNV PIGDGAPIAV QSMTNTKTTD VEATVAQIRA LEKVGADIVR 
VSVPTMDAAE AFKLIKQSVS VPLVADIHFD YRIALKVAEY GVDCLRINPG NIGNEERIRS 
VVECARDKNI PIRIGVNGGS LEKDLMDKYK EPTPEALLES AMRHVDILDR LNFDQFKVSV 
KASDVFLAVE SYRLLAKQIR QPLHLGITEA GGARAGAVKS AVGLGMLLAE GIGDTLRISL 
AADPVEEIKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV ISTVNELERR LEDVTTAMDV 
SIIGCVVNGP GEALVSHIGL TGGHRKSGYY DEGERQKERF DNDNLVDSLE AKIRAKASQM 
ANRIQVKDTT E