| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3303 |
|---|
| Symbol | |
|---|
| ID | 1170990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 3451929 |
|---|
| End bp | 3454373 |
|---|
| Gene Length | 2445 bp |
|---|
| Protein Length | 814 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637345113 |
|---|
| Product | chitinase domain-containing protein |
|---|
| Protein accession | NP_718857 |
|---|
| Protein GI | 24374814 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAA AAAGTTACAT AGCTGCAGTG ATTTCACTTC TGCTTGGGAC ATCGACGTCA
GCTTTTGCTC AATGGCCCAG TACCCCAACA TTGGACCCTA TTCGTGTTGC ACAGGATGCG
AATTCACCGC TTATTGCCCC TGATAATGAT GGCGGTGCTT TTGTCAGCTT CCGAAATGGT
GGATTTTACG ATGATAAAGG GGGATTTGAT GTTTTAATTC AACACTATGA CTCACTTGGA
AATCCATCTT GGAATGAGCC TGTACTCGTG TTTGATACAA GCAAAGCTTG GGCTTCTTAC
TATGGTGCTG TTACCGATTC AGAGGGGAAT GCCTATATCG CTTCCGATAT ATTTGAAGGT
AGCAATTATA GTGACCACAG TGCAGTTTAT TTAGCCAAAA TATCCAAAGA TGGAAAGTTG
GCTTGGGAAC AACCTTTAAA TTTAACCCCT AATGTTGATC TTCCCGTTAA TAGTCTTGGT
ATTAGTTTGG GGGCGCATGC AGAGCATATT GTTGCAGCAT GGAGTAAGTC TACCTCTAAC
TATACGGTCG ATACTTTTGG TAGTCTTAGT TGTGTCAATA AAGAAGGCAA ATTGGTATGG
AGTAAAGATA TTACTATCAA TAATAGCTAT ACCTTTGCCA GCCAACCGAT AGTGAGTGAT
GATTCTGTCA TTGTGTTACT CGAAGTAGGA GCGACACCTG ACACAACCGC CTCCCACTTT
ATGATGCAAA AATACTCCAT CGTCGATGGA AAGCCTATGT GGGCAGAGCC TGTTAGCATT
ACTTCTGGAG ACAACTTTCT TCATCAAGTT AATAGTGGAC GATCCGTTCA AGTTAAAAGT
GATGGAGAAG GGGGCGTCGT TCTCAGTTTT TATCATATTA CTGGTCCGAA TCAGGGGATT
ATCCTTCTAC AGCATGTGCG GGCTGATGGC CAAAAAGTCT TCTCGGGACA AGGCTTAAGG
CTTTCTGGTG ATTCATTAGA AAATGGTGCA GTCTCACTTG CCTATGATGG TGAAACTTAC
TATGTGACTT GGCCAGCAAG TCAGTCAGTG CAAGCGGAAA GCGGTGAAAG TAGCCACTAT
AGTGCAATTA AAGGTGTTGC TATTAATCAG CAAGGAAAAT TTATTTGGAA TAGTGATGGC
AGTACTCATC CAAGCATGCT GAAAGATTGG AAACGACTCA ACACTGAAGG ACCATTAGAT
AACTGGTTTA GCGGTTATAC CAACCCGGCT ATTACATTAA ATGAACATGG TCATCTTAAT
ATGACCTACG GTGAAGAAAC GATTTACAAG TATTATTTGT ATGCCCAGGT TATTGATACC
AAGACTGGGG ATAATCGCAG TTTACCGGTT TCATTTTCCG ATGGCCCCAT TGAAGTTATC
GATAATATGG CCTTTGGTAG AACCATTTTT GGTCAACCTC TACTCAGTTA TGTTGTTGAC
TCTGAGACTG ACTCATCCGG TGGAACACTT AACCTTCTGA ATTTTGATGG CAATGCTAAT
TCAGGCATCA GTAAAGATAT TCTTGTAGAA AAGATCGCGC CAATTAATTT AAGCCCAGGC
GAAGATAAAT TAATCACATT AAAAATATTA GATTCAAAAA GTCAGCACCA TGAGAAAACC
GTCTCCTCAT CGGCTGGGGT GGTAAATTCA CAAGTGCAAG AGGCTGCGAA TAAGCTAGCT
TTTACAATTA GCACTGATAA TTGGCTTGAG CTGCCCGATA CCGTCTTAGC AAAAGTGCAA
GATTTAGACA ATGTCGAACG TGTTGGTTTA TCTGTGATAA AAGTTAAAGC ACCCAGTTAT
CGTCCCCCTA AGGTGATGCC ATTTAGCAGT ATTAGCATTA ACGAAGGGGA ACATGCACAA
ATTACCGCAA GCATCGATGC CGCAGCAGAC GCCAAACTTG AGTTTAGTTG GCAGCAGACT
GCAGGACCTA GTGTTAGCTT TACTAACAAT AACAGTCAAT TGGATATTGC AACAGATTAT
GTTGCTGCCG ACACCAAATT AACCTTTGCT CTCTCTGTCA CTGATGGTGT GCTTGTCAGT
CAAGAACACG TTGATGTTAT TGTGAAAAAC ACATCCTCTC CGACGCTCAA GGGCGCTGAC
ACGCAAGCTC AATTAGGTCA ACAATTTACC CTAAAACCTA TGATTACAAG TGCAAAGTTG
CCTATCAGTT ATCACTGGTC ACAAGTGAGT GGTGCCAGAA CCGTTTACAC AGTTGGAAAT
GAAGGCTCAC TTAATGGTAC GGCGCCTCTG AGTAATGGTT CAGTGACTTT CTTGCTAGAA
GCGAAAGATG CGAATGGTGA GATGTTCAGC AAAAGTTTTA ACTTAAGCGT TGCAGAACAA
TCAAGCTCTG ACAGTAGCGG TGGCAGTTTA GGTATTTCTC TCCTTTTACT CGGTCTTCTG
GGTATATGGA AAAGAATTTT TGGTAAGTCC CAATTTAATG CGTGA
|
|---|
| Protein sequence | MTKKSYIAAV ISLLLGTSTS AFAQWPSTPT LDPIRVAQDA NSPLIAPDND GGAFVSFRNG
GFYDDKGGFD VLIQHYDSLG NPSWNEPVLV FDTSKAWASY YGAVTDSEGN AYIASDIFEG
SNYSDHSAVY LAKISKDGKL AWEQPLNLTP NVDLPVNSLG ISLGAHAEHI VAAWSKSTSN
YTVDTFGSLS CVNKEGKLVW SKDITINNSY TFASQPIVSD DSVIVLLEVG ATPDTTASHF
MMQKYSIVDG KPMWAEPVSI TSGDNFLHQV NSGRSVQVKS DGEGGVVLSF YHITGPNQGI
ILLQHVRADG QKVFSGQGLR LSGDSLENGA VSLAYDGETY YVTWPASQSV QAESGESSHY
SAIKGVAINQ QGKFIWNSDG STHPSMLKDW KRLNTEGPLD NWFSGYTNPA ITLNEHGHLN
MTYGEETIYK YYLYAQVIDT KTGDNRSLPV SFSDGPIEVI DNMAFGRTIF GQPLLSYVVD
SETDSSGGTL NLLNFDGNAN SGISKDILVE KIAPINLSPG EDKLITLKIL DSKSQHHEKT
VSSSAGVVNS QVQEAANKLA FTISTDNWLE LPDTVLAKVQ DLDNVERVGL SVIKVKAPSY
RPPKVMPFSS ISINEGEHAQ ITASIDAAAD AKLEFSWQQT AGPSVSFTNN NSQLDIATDY
VAADTKLTFA LSVTDGVLVS QEHVDVIVKN TSSPTLKGAD TQAQLGQQFT LKPMITSAKL
PISYHWSQVS GARTVYTVGN EGSLNGTAPL SNGSVTFLLE AKDANGEMFS KSFNLSVAEQ
SSSDSSGGSL GISLLLLGLL GIWKRIFGKS QFNA
|
|---|
| |