| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3288 |
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| Symbol | |
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| ID | 1170978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 3433162 |
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| End bp | 3434535 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637345101 |
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| Product | putative transglycosylase |
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| Protein accession | NP_718842 |
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| Protein GI | 24374799 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGAAGAAA CAGAATTCGT CCCGCATAAA CTCACCGAAT TAAGAGTCGG CACCCTCTAT
GGCCCACAAA TTTACATGAC CTCAGGCCAA GGCAACAGTG GCTTCGATTA TGATATGGCA
GTGCTCTTTG CCGAATATCT CGATGTTCCC TTAAAAATGG TGCCTTATAC AAATCTTGCT
GAACTTTATG ATGCGCTGAA AAAAAACGAG ATCGATATCA TTGCTGCGGG CATGACCGAA
ACCCCTGCTC GTCGAGAGCA TTTTCGTTTA GGTCCACCTT TGTATCGCGT TAATCAAGTA
TTGGTTTACC GAGAAGGCAT GCCTGCACCT AAAGATATCT CTGATTTGAA AGGTAAAATA
ACCGTTATTG CCGACTCTTC GTTTGTCGAA ACCTTAACTC AATTACAGAA ACGTCATCCA
ACACTTGTGT GGGATCAAGT GACGGATAAA GATAACGAAG AACTGCTGAC GATGATCGCC
AATAAGGAAA TTGACTACAC CATTGCAGAC TCGAGCAGCG TGCAAATTAA CCGCCGATAT
TTACCCGTCT TACGATCTGG ACTGGTACTG GAAGAAAAAC TCAATGTTGT CTGGTTGTTG
CCCCCCACCC ATAGCGATGG CTTGATGAGT CAATTGCTAG CATTTTGGCA TCAAGAGAAA
CTCGCTGGTA CACTCGATCA CCTTAACGAG AAGTACTTTG GCCATGTTAA ACGTTTCGAC
TATATCGACA CACGCGCCTT CCTGCGCGCT ATTGAAACCG TTTTACCACG TTATCGGCAG
CACTTTGAAA CCCACGCAGG TGACTTAGAT TGGCGTAAAT TGGCCGCGAC CAGTTACCAA
GAATCCCACT GGAATCCTAA TGCCCGCTCA CCTACTGGCG TGCGCGGTAT GATGATGCTG
ACGCAGCCGA CAGCAAAAGA GATTGGGATC ACCAACAGAC TCGACGCCGA AGAAAGTATT
CGCGGCGGAG CAGCTTATTT ACGGGATATG ATTAACCGCT TACCTGAATC GATCCCCGAA
AGCCAACGTA TGTGGTTTGC ACTGGCATCC TACAATATCG GTTATGCCCA TGTAGAAGAT
GCGCGAAAAC TTGCCGAATC CATGGAGTTA AACCCTAACG CTTGGCAAGA CCTTAAAAAA
GTATTGCCAC TGCTACAAAA ACGTAAATAC TACCAAAAGA CACGCTATGG TTACGCCCGA
GGCAGCGAAG CCGTCCATTA CGTGGATAGT ATTCGCCGCT ATTACGACAC CTTAGTCTGG
GTAGATAATC AATCTAAACA ACAAAATAGC GAAGAAGTTG CACCGAGCGA CCTCACTGCG
GAAGAAACAC CCGTACCAGC GCCAGGCACC TTAAGCCCTG ATAAACCCAA ATAG
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| Protein sequence | MEETEFVPHK LTELRVGTLY GPQIYMTSGQ GNSGFDYDMA VLFAEYLDVP LKMVPYTNLA
ELYDALKKNE IDIIAAGMTE TPARREHFRL GPPLYRVNQV LVYREGMPAP KDISDLKGKI
TVIADSSFVE TLTQLQKRHP TLVWDQVTDK DNEELLTMIA NKEIDYTIAD SSSVQINRRY
LPVLRSGLVL EEKLNVVWLL PPTHSDGLMS QLLAFWHQEK LAGTLDHLNE KYFGHVKRFD
YIDTRAFLRA IETVLPRYRQ HFETHAGDLD WRKLAATSYQ ESHWNPNARS PTGVRGMMML
TQPTAKEIGI TNRLDAEESI RGGAAYLRDM INRLPESIPE SQRMWFALAS YNIGYAHVED
ARKLAESMEL NPNAWQDLKK VLPLLQKRKY YQKTRYGYAR GSEAVHYVDS IRRYYDTLVW
VDNQSKQQNS EEVAPSDLTA EETPVPAPGT LSPDKPK
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