Gene SO_3270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3270 
Symbol 
ID1170963 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3408733 
End bp3409878 
Gene Length1146 bp 
Protein Length381 aa 
Translation table11 
GC content44% 
IMG OID637345086 
Productpolysaccharide biosynthesis protein 
Protein accessionNP_718824 
Protein GI24374781 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 
TIGRFAM ID[TIGR03588] UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCCCCT ATGGCCGACA AGACATCAAT CAGGCAGATG TTGATGCTGT GATTGAAGTG 
CTTAATTCTG ATTATTTGAC TCAAGGGCCT AAGGTTCCGG CATTTGAGTC AGCAGTTGCT 
TCCTATTGTT CAGCTCGCTA TGGCGTAGCA GTAAATAGTG CGACTTCTGC CTTGCATATT 
GCATGTCTCG CTCTTGGGGT TGGGCCAAAC GATATAGTAT GGACTTCTCC AATTACCTTT 
GTCGCCTCGG CAAACTGCGC GCTTTACTGT GGAGCTGAGA TTGATTTTGT CGATGTGGAT 
CCTCTAACGG GTAATCTTTG TCCACATGCA TTGGCAATGA AATTAGAACA AGCGGCTCGG 
ATAGGGAAGC TCCCTAAGGT TGTTATCCCT GTACATTTAT GTGGTCATAG TTGTGATATG 
GCAGCGATCG CTGCTCTTGC TGAACAATAT AGCTTTCACA TCATTGAAGA TGCCTCACAT 
GGGATTGGCG GGAGCTATCA TGGATACCCT TTGGGTAGCT GCCAATACTC TGATATTACC 
GTTTTTAGCT TTCACCCCGT CAAAATTATC ACCAGCGCCG AAGGCGGTAT GGCCATGACA 
AACAGCTCAG AATTAGCTGA AAAAATGGCC CTTTACCGCA GCCACGGTAT CACTAAAGCC 
CCCGATAAAA TGTTAAGACC TGATGAAGGG GACTGGTATT ACGAACAACA CGCCTTGGGA 
TTTAACTATA GGATGACGGA GTTGCAGGCA GCGCTTGGTT TGTCGCAAAT TAGCAGGCTT 
AATGCCTTTG TTTTGAAACG CAATGAACTA GCCGCTATAT ATCGTAAAGA ACTCATTGGA 
TTACCCTTTT GCTGGGTTGA GCCTTTGTCA AATACTCAAA GTGCTAGACA TTTACAAATT 
ATCCGCCTAA ATGACGCATC AAGAAGAAAA CAGCTATTCA ACGATATGAG AGCTGCAAAT 
GTACAAGTGC ATGTTCATTA TTTCCCCGTA CATCTTCAAC CTTACTATTT AAAACAAGGA 
TTTAAAGAAG GTGATTTCCC ACAAGCAGAG GCATTTTATC AACAGATATT GACCTTGCCA 
CTCTATCCTT TGATGACTGA TAAGGAACAA GCTTGCGTTA TTAACACCTT GTTAGCTGTA 
CTGTAA
 
Protein sequence
MIPYGRQDIN QADVDAVIEV LNSDYLTQGP KVPAFESAVA SYCSARYGVA VNSATSALHI 
ACLALGVGPN DIVWTSPITF VASANCALYC GAEIDFVDVD PLTGNLCPHA LAMKLEQAAR 
IGKLPKVVIP VHLCGHSCDM AAIAALAEQY SFHIIEDASH GIGGSYHGYP LGSCQYSDIT 
VFSFHPVKII TSAEGGMAMT NSSELAEKMA LYRSHGITKA PDKMLRPDEG DWYYEQHALG 
FNYRMTELQA ALGLSQISRL NAFVLKRNEL AAIYRKELIG LPFCWVEPLS NTQSARHLQI 
IRLNDASRRK QLFNDMRAAN VQVHVHYFPV HLQPYYLKQG FKEGDFPQAE AFYQQILTLP 
LYPLMTDKEQ ACVINTLLAV L