| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3210 |
|---|
| Symbol | fliA |
|---|
| ID | 1170903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 3350155 |
|---|
| End bp | 3350868 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637345026 |
|---|
| Product | flagellar biosynthesis sigma factor |
|---|
| Protein accession | NP_718765 |
|---|
| Protein GI | 24374722 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
|---|
| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAATAAAG CCGCAGCGTA TACTTGTTTA GACAATAAAA CGTCAATCGT TGAACAGTAT
GCACCGTTGG TTAAAAGAAT TGCACATCAC TTGCTTGCCA GATTACCTGC CTCAGTGCAG
TTAGATGACC TGCTACAGGC TGGGATGATG GGATTATTAG AAGCATCATC TAAGTTTGAT
GGCGGTAAAG GTGCAAAGTT TGAAACCTTC GCCGGCATAA GGATCCGTGG CGCCATGTTG
GATGAAATCC GCCGTGGCGA TTGGGTTCCT CGTTCTGTTC ACCGTAATAA TCGCCGAATT
GCCCAAGCTA TTGATGAGTT AGAGCAAGTG CTAGGTCGTG ATGCGCGCGA CACAGAAATT
GCAGAAAAAC TTGATATGAC GCTCGATGAG TACCATCATA TTCTTAACGA TGTTTCTGTT
GGTAAAATCA TAGGGATAGA AGACTTAGGC GTATCAGAGG ATATACTCAC TACAAGCGAT
AATGTTAGCG ATGGTACGTT TGAGGTATTG GCAGAAACCC AGTTTCATTC TGCACTTGTT
GAGGCGATAA AAATATTGCC CGAAAGAGAT GCGCTAGTGC TATCGTTATA CTACGATGAA
GCATTGAATT TAAAAGAAAT TGGCGCCATT CTTGAAGTAA GCGAATCGCG AGTTAGCCAG
ATATTAAGTC AGGCAATGTT GCGACTCAAA GGCAAACTCA AGCAGTGGAC ATAA
|
|---|
| Protein sequence | MNKAAAYTCL DNKTSIVEQY APLVKRIAHH LLARLPASVQ LDDLLQAGMM GLLEASSKFD
GGKGAKFETF AGIRIRGAML DEIRRGDWVP RSVHRNNRRI AQAIDELEQV LGRDARDTEI
AEKLDMTLDE YHHILNDVSV GKIIGIEDLG VSEDILTTSD NVSDGTFEVL AETQFHSALV
EAIKILPERD ALVLSLYYDE ALNLKEIGAI LEVSESRVSQ ILSQAMLRLK GKLKQWT
|
|---|
| |