Gene SO_3188 details

Gene Information

• Locus tag: SO_3188
• Symbol: rfbB
• ID: 1170881
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 3325912
• End bp: 3327039
• Gene Length: 1128 bp
• Protein Length: 375 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637345004
• Product: dTDP-glucose 4,6 dehydratase
• Protein accession: NP_718744
• Protein GI: 24374701
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1088] dTDP-D-glucose 4,6-dehydratase
• TIGRFAM ID: [TIGR01181] dTDP-glucose 4,6-dehydratase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATTT TAGTAACTGG TGGGGCGGGC TTTATTGGTT CTGCAGTCGT ACGCCATATC 
ATTGGGAATA CCCAAGACTG CGTGGTTAAC GTAGACAAAC TTACCTACGC CGGCAACTTA 
GAATCACTTA CTAGCGTTGC TGATAGTCCG CGCTACACAT TCGAAAAAGT AGATATTTGT 
GATCGTACTG AGCTTGAACG AGTGTTTTCA CTGCATCAAC CGGATGCTGT TATGCACCTT 
GCTGCAGAGT CTCATGTTGA TCGCTCAATT ACCGGCTCAG CAGATTTTAT TCAAACGAAT 
ATTGTGGGTA CTTACACGCT ACTTGAAGCT GCACGCCATT ACTGGATGCA ACTTAATACT 
GAGCGTAAAT CAGCTTTCCG TTTCCACCAT ATATCTACAG ATGAAGTGTA TGGTGATTTA 
CCACACCCAG ATGAAATCAA TGTTGAATGC TCAATGTTGA ATGATGAATG TAAAGACCAC 
TCAACACTTA ACATTCAACA CTCAACATTG CCTCTTTTTA CTGAGACCAC ACCTTATACG 
CCTAGCAGTC CCTATTCAGC CTCTAAAGCT TCAAGCGACC ACCTAGTACG CGCATGGCTA 
CGTACCTATG GTTTCCCGAC GATTGTAACC AACTGCTCCA ATAACTATGG TCCTTATCAC 
TTTCCTGAAA AGTTGATTCC ATTGGTTATC CTGAATGCAC TCGAAGGCAA GCCATTACCT 
ATTTATGGTA AGGGCGATCA GATTCGTGAT TGGCTATATG TCGAAGACCA TGCTCGCGCA 
CTTTTTAAAG TTGTTACTGA GGGAAAAGTT GGAGAAACAT ATAATATTGG TGGGCATAAC 
GAAAAGCGGA ACTTAGAAGT AGTACAAACT ATTTGCAGCA TCTTAGATTC ATTAGTGCCT 
AAAAACACGC CTTATGCTGA GCAAATTGCC TATGTCGCAG ATAGACCTGG CCATGATCGC 
CGATATGCCA TTGATGCAAC AAAAATGAGT GCTGAGCTTG ATTGGCAGCC ACAAGAGACT 
TTTGAAACGG GTCTACGTAA AACCGTCGAA TGGTATTTAG CAAACCAAGA ATGGTGCCAG 
CATGTTCAAG ATGGAACTTA TCAGCGTGAG CGCTTAGGCG AACTTTAG 

 

Protein sequence

MKILVTGGAG FIGSAVVRHI IGNTQDCVVN VDKLTYAGNL ESLTSVADSP RYTFEKVDIC 
DRTELERVFS LHQPDAVMHL AAESHVDRSI TGSADFIQTN IVGTYTLLEA ARHYWMQLNT 
ERKSAFRFHH ISTDEVYGDL PHPDEINVEC SMLNDECKDH STLNIQHSTL PLFTETTPYT 
PSSPYSASKA SSDHLVRAWL RTYGFPTIVT NCSNNYGPYH FPEKLIPLVI LNALEGKPLP 
IYGKGDQIRD WLYVEDHARA LFKVVTEGKV GETYNIGGHN EKRNLEVVQT ICSILDSLVP 
KNTPYAEQIA YVADRPGHDR RYAIDATKMS AELDWQPQET FETGLRKTVE WYLANQEWCQ 
HVQDGTYQRE RLGEL