Gene SO_3160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3160 
SymbolrfbC 
ID1170854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3297547 
End bp3298086 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content47% 
IMG OID637344977 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionNP_718716 
Protein GI24374673 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTGCA TTGAAACCGA GCTGGCTGAA GTACTTATCT TTGAACCTAA GGTATTTGGC 
GATGAGCGTG GTTTTTTTAT GGAAACCTTT CGGCAAGCGT ATTTTACTGA GTGCTTGCTG 
AGTCGCGGAT TTGAAGCCCC TGCGTTAGTA CAAGATAACT ACAGTCGCTC GCAGCAGCAT 
GTGTTGCGTG GATTGCATTA TCAACTCCGG CATCCGCAGG GCAAATTGGT CCGCGTATGT 
GCCGGCAGTA TTTTTGATGT TGCCGTCGAT ATTCGGCCGC AATCTGCGAC CTATGGAAAA 
TGGGTTGGCA GGATTCTTTC TGCTGATAAC CATTTACAAA TGTGGATCCC GCCAGGATTT 
GCCCATGGGT TTTATGTGTT GAGTGAATAC GCTGATGTGC TGTATCGCTG CAGCGATTAT 
TATGCGCCGA ATGATGAATA TGTGTTGCCT TGGAATAGTG TGCAGTTTGC AATTGACTGG 
CCGCTGTTAA ATGAAACACC CATTCTTTCC GCAAGGGATG CAAACGCCGT TAGCGCCTAA
 
Protein sequence
MKCIETELAE VLIFEPKVFG DERGFFMETF RQAYFTECLL SRGFEAPALV QDNYSRSQQH 
VLRGLHYQLR HPQGKLVRVC AGSIFDVAVD IRPQSATYGK WVGRILSADN HLQMWIPPGF 
AHGFYVLSEY ADVLYRCSDY YAPNDEYVLP WNSVQFAIDW PLLNETPILS ARDANAVSA