Gene SO_3135 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3135 
Symbol 
ID1170823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp3264102 
End bp3264761 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content44% 
IMG OID637344950 
ProductC4-dicarboxylate transporter, putative 
Protein accessionNP_718695 
Protein GI24374652 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATAGCGC GAATTTTTGG TTACTTTGAA GAAGGTGTAC TTAACCTATT GATCACCTTG 
ATGACACTAT TGGTGTTTAC CGAAGTGGTC GCCCGCTTTT TTTTCGATAC CGGTTTTTTA 
TGGATCCAAG AACTCACCTT AACCCTGTGT GGTTGGTTTG TGTTATTTGG CATGTCCTAT 
GGTGTAAAGG TTGGTGCCCA TATTGGGGTG GACGCCTTAG TAAAAAAACT CCCCCCTAAC 
GCCAAAAAAA TCACCTCCTT AATCACCACT TTGATTTGCT TGACTTACTG CATACTGTTT 
TTAAAAGGTA GTTGGTCCTA TCTGTCACAA ATGTACCAAA TCGGGGTGCC AATGGAAGAT 
ATCCATTTCC CCGCTTGGCT GTTGGCGCGT CTGGATCCTG ATTGGGCTTG GAATGTACTC 
AAAATTGATA TAGAAGATGG CGCAGTACCC ATTTGGATAT CGCAGAGTAT CCTCTTGATT 
GGCTTTAGTA TGCTCACTTG GCGTTTTATA GAGCTTTTTG TCGCCATTTT ACGTAACCAG 
GTGACTGGTT TAAGTTTTGC CGATGAAGCC AAAGAAAGTA TGCATTTAAT CGATGACACC 
GCTATACAGT CTCAAGGCCC GCAGCACACT ACTGGCGCTG CCCACAAGGA ATTACCATAA
 
Protein sequence
MIARIFGYFE EGVLNLLITL MTLLVFTEVV ARFFFDTGFL WIQELTLTLC GWFVLFGMSY 
GVKVGAHIGV DALVKKLPPN AKKITSLITT LICLTYCILF LKGSWSYLSQ MYQIGVPMED 
IHFPAWLLAR LDPDWAWNVL KIDIEDGAVP IWISQSILLI GFSMLTWRFI ELFVAILRNQ 
VTGLSFADEA KESMHLIDDT AIQSQGPQHT TGAAHKELP