Gene SO_3134 details

Gene Information

• Locus tag: SO_3134
• Symbol: dctP
• ID: 1170822
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 3263019
• End bp: 3264038
• Gene Length: 1020 bp
• Protein Length: 339 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637344949
• Product: C4-dicarboxylate-binding periplasmic protein
• Protein accession: NP_718694
• Protein GI: 24374651
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component
• TIGRFAM ID: [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACATTGA ATCAACAGAT GGGTATCACT CGTCCATTAA AAACCGTTGC TAAGATGCTG 
GCACTGGCCT CAGTGTTTGC TACCAGCTTC AACGTTTTTG CAGCACCGGT CGAAATTAAA 
TTCTCCCACG TAGTGGCAGA AAACACGCCA AAAGGTCAAA TGGCCTTAAA ATTTAAAGAA 
TTAGTCGAAC AACGCTTACC CGGTGAATAT ACCGTCAGCG TATTCCCTAA CTCTCAGTTA 
TTTGGGGATA ACAACGAGTT AGCGGCATTA CTGTTAAACG ATGTGCAATT TGTTGCACCT 
TCACTCTCTA AATTTGAACG TTACACTAAA CGCTTACAAG TTTTCGACTT ACCTTTCCTG 
TTCAATGACA TGGATGCAGT AAACCGTTTC CAACAGGGCG AAGCAGGTCA AGCACTGCTC 
AACTCAATGA GCCGCAAAGG GATTGTGGGT CTGGGCTATT TACATAATGG TATGAAGCAG 
TTCACAGCCA ACACTCCACT GAAGCAACCT TCCGATGCTA AAGGTTTAAA ATTCCGCGTA 
ATGGCATCTG ACGTATTAGC CGCACAGTTT GATGCTGTTG GTGCCATTCC GGTGAAAAAA 
CCTTTCTCTG AAGTATTCAC CCTACTGCAA ACCCGTGCGA TCGATGGCCA AGAAAATACC 
TGGTCAAACA CCTACTCACA AAAATTCTAT GAAGTGCAAA GCCATATTAC TGAAAGTAAC 
CACGGCGTGT TGGACTACAT GGTCGTGACC TCTGACGCCT TCTGGAAAAG CTTACCAGCC 
GATAAACGCA AAGTGATCAA AGAAGCGTTA GATGAATCAA TCGCTTTAGG TAATAAAATT 
GCTGCTGAAA AGGATAATGA AGATAAGCAA CTTATTCTTG ATTCAAAACT CTCTCAGTTA 
GTTACACTCA GCCCCGCAGA GCGTCAACAG TGGGTTGATG TGATGAAGCC AGTGTGGTCG 
AAATTTGAAG ATCAAGTCGG TAAAGACGTG ATTGAAGCCG CTGTTGCCGC AAATAAATAA 

 

Protein sequence

MTLNQQMGIT RPLKTVAKML ALASVFATSF NVFAAPVEIK FSHVVAENTP KGQMALKFKE 
LVEQRLPGEY TVSVFPNSQL FGDNNELAAL LLNDVQFVAP SLSKFERYTK RLQVFDLPFL 
FNDMDAVNRF QQGEAGQALL NSMSRKGIVG LGYLHNGMKQ FTANTPLKQP SDAKGLKFRV 
MASDVLAAQF DAVGAIPVKK PFSEVFTLLQ TRAIDGQENT WSNTYSQKFY EVQSHITESN 
HGVLDYMVVT SDAFWKSLPA DKRKVIKEAL DESIALGNKI AAEKDNEDKQ LILDSKLSQL 
VTLSPAERQQ WVDVMKPVWS KFEDQVGKDV IEAAVAANK