Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3113 |
Symbol | tgt |
ID | 1170802 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3241717 |
End bp | 3242841 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637344918 |
Product | queuine tRNA-ribosyltransferase |
Protein accession | NP_718675 |
Protein GI | 24374632 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming [TIGR00449] tRNA-guanine transglycosylases, various specificities |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTTG AACTTGACAC TACCGACGGC CGTGCGCGCC GTGGCCGGTT GATTTTTGAT CGTGGTACGG TAGAAACGCC AGCATTTATG CCCGTCGGGA CTTACGGTAC CGTGAAAGGC ATGACGCCTG AAGAAGTTCG TGCGACTGGC GCCGATATTC TGCTCGGTAA CACCTTCCAT TTATGGTTGC GTCCCGGCGA AGAAATCATG CGTAAGCACG GTGACCTGCA CGACTTTATG AACTGGCAGC GTCCAATTCT CACCGATTCC GGCGGTTTTC AAGTGTTCAG CTTGGGTGAT ATTCGTAAAA TTACCGAAGA AGGGGTGCAT TTCCGCTCGC CAATTAATGG TGAGAAAATC TTCTTAGATC CTGAAAAATC AATGCAAATT CAACATGCGT TGGGCAGTGA TGTGGTGATG ATTTTTGACG AATGTACCCC GTATCCAGCG ACAGAAGATG AAGCGCGCAA GTCAATGCAG ATGTCACTGC GTTGGGCTAA GCGTTCACGC GACGAGTTCG ACCGTCTGGA AAACCCCAAT TCATTATTTG GGATTATCCA AGGCAGTGTT TATGAAGATT TACGCGACGA AAGCTTAAAA GGCTTAGTCG AAATTGGTTT CGACGGTTAT GCCGTCGGCG GTTTGGCCGT AGGTGAGCCT AAGGAAGATA TGCATCGCAT TCTTGAGCAT GTCTGCCCAC AAATTCTTGC GGACAAGCCA CGCTATCTGA TGGGGGTCGG TAAGCCAGAG GATTTAGTTG AAGGTGTGCG TCGTGGTATC GATATGTTTG ACTGTGTGAT GCCAACCCGT AACGCCCGTA ACGGTCACCT GTTTACCAGT GAAGGTGTGA TTAAGATCCG CAATGCGCGT CATCGTGATG ACACTTCACC ACTTGATCCT AAGTGTGATT GTTATACCTG TAAAAACTAT TCACGGGCAT ACCTTTACCA CTTAGATCGT TGTAATGAGA TTCTGGGTGC GCGTTTAAAC ACCATTCACA ACTTGAGATA CTATCAAATG TTAATGGAAG GTTTGCGCGG TGCGATTGAG ACAGGTACAT TAGACGCCTT TGTGAAGGAC TTCTATACCA GTCAAGGTCG TGAAGTACCA GAGTTAGTCG ATTGA
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Protein sequence | MKFELDTTDG RARRGRLIFD RGTVETPAFM PVGTYGTVKG MTPEEVRATG ADILLGNTFH LWLRPGEEIM RKHGDLHDFM NWQRPILTDS GGFQVFSLGD IRKITEEGVH FRSPINGEKI FLDPEKSMQI QHALGSDVVM IFDECTPYPA TEDEARKSMQ MSLRWAKRSR DEFDRLENPN SLFGIIQGSV YEDLRDESLK GLVEIGFDGY AVGGLAVGEP KEDMHRILEH VCPQILADKP RYLMGVGKPE DLVEGVRRGI DMFDCVMPTR NARNGHLFTS EGVIKIRNAR HRDDTSPLDP KCDCYTCKNY SRAYLYHLDR CNEILGARLN TIHNLRYYQM LMEGLRGAIE TGTLDAFVKD FYTSQGREVP ELVD
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