Gene SO_3096 details

Gene Information

• Locus tag: SO_3096
• ID: 1170781
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 3221892
• End bp: 3222455
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637344898
• Product: RNA polymerase sigma factor
• Protein accession: NP_718659
• Protein GI: 24374616
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTGCTA ACTGGCGAAA TAAATCCGTT GAGCCTGCGG TCTCTTCTGA CATGCTGAGT 
AAACAACGAC GATACAACAG CCTCGTCAAG GCGCTGCACG CCGACATTTT CCGCTATGCC 
TTTTGGTTGT GCGGCGAAAA GCAGGTGGCA GAAGACATCA CCCAAGAAAC CTTCTTGCGG 
GCGTGGCGCG CTTTAGATTC CCTGCAGGAT GATAAAGCGG CGAAGGCTTG GCTTATCACG 
ATTTTAAGAC GTGAAAATGC CCGTCGATTC GAGCGCAAAC AATTTGATTA CGCCGATGTC 
GAGCAAGAGA GCTTAGAAGA TCACCTTGCC TCCGGCACTG AAGAACAAAC TGAGCAGTAT 
TGGCTGAGAA GGCAAATTGC CAAGCTAGAT ATCGAATATC GGGAGCCATT ACTACTGCAG 
TTAATTGGTG GATTTAGTGG TGATGAAATC GCCGAGCTGT TGGAGCTGAA TCGTAATACC 
GTAATGACAC GATTATTTCG GGCGAGGAAC CAATTGAAAG AACTACTTGA GAAAACAGCG 
GTAAGAGGTC AATCCAATGG ATGA 

 

Protein sequence

MFANWRNKSV EPAVSSDMLS KQRRYNSLVK ALHADIFRYA FWLCGEKQVA EDITQETFLR 
AWRALDSLQD DKAAKAWLIT ILRRENARRF ERKQFDYADV EQESLEDHLA SGTEEQTEQY 
WLRRQIAKLD IEYREPLLLQ LIGGFSGDEI AELLELNRNT VMTRLFRARN QLKELLEKTA 
VRGQSNG