Gene SO_3094 details

Gene Information

• Locus tag: SO_3094
• ID: 1170779
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 3218125
• End bp: 3220164
• Gene Length: 2040 bp
• Protein Length: 679 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637344896
• Product: TPR domain-containing protein
• Protein accession: NP_718657
• Protein GI: 24374614
• COG category: [R] General function prediction only
• COG ID: [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCTGC ATTTTATTCG TCCAGAATGG TTACTCGCCC TACTGCCATT GGTGATTATT 
TTATGGATGC TTTGGCGCCA GCATGCAACT AACAGTGCTT GGAACCGTTA TATTGCGCCA 
CATTTGGCAA AAGTATTAGT CACAGAAGGT TCGCAAAAGT CCCGCAGGCC GCTGCATATA 
TTGGCCTTTT CTTGGTTTAT CGCCACCTTA GCGTTAGCTG GACCGGCCCT CAATAAGCAA 
TCTTTGCCCG TTTTCGCCGC AGAGCAAGGC CGAGTGCTGG TGATGGATAT GTCCGTCTCC 
ATGTTTGCCA CCGATTTGGC ACCTAACCGT TTAACCCAAG CCAAATTTAG GGCGACAGAT 
TTACTCCGCA GCTTAAAAGA AGGAGAAACC GGACTTATCG CCTTCGCGGG CGATGCCTTT 
ACGATCAGCC CCTTAACCCG AGATACTGGC ACTTTACTCA ATTTATTGCC GACCTTAAGC 
CCTGAGATTA TGCCCGTGCT AGGGTCAAAC TTAGCCGCCG CATTAACCCA AGCCAAAAAC 
CTGCTGGCAC AGGGCGGACA TCTTCGCGGC GATATTATCG TAATGACCGA TGGCATCACC 
CCAAGACAAT TTGATGAAGC CAATTCGGTA TTGACGGGCA GCCAATATCG CCTCGCAATA 
ATGGGATTTG GCAGCAATCA AGGCGCACCA ATTCGCTTAC CCGATGGCCA ATTGCAAAGG 
GATAGCAGCA ATGAGGTCGC AGTCGCCAAA ACTGACTTTG GCTTGCTGCA AAAATTAGCC 
GATAACCATA ATGGCATTAT GATCCCCAAT CGCGCCGATG GTGAGGATCT TGTCCAACTT 
CAACATTGGT TAAGCGATAG TGGCGATGCC AAAGCCACGG ATCTTGATGG CGAAACCTGG 
CAAGATCTCG GCCCTTACCT CGCCTTATTC TTACTCATTC CTGCCCTGCT GAGCTTTAGG 
CAAGGTATGC TCGCCAGTTG GATGCTGATG GGATTTGCCA GCCTACTACT CGGCGCACTG 
CCACAAAATG CCCATGCTAA TGCTTGGAAC TCACTCTGGC ACACTCAAGA GCAGCAAGCG 
ATGCAGGCTT ACCAAGCCGA GGACTATGCA AGTGCCGCCC AAAAGTTTGA AACTCCCCAA 
TGGCAAGGCG CTGCACAATA TAAGGCTGGC AATTTCGAAC AAGCGCTAAA AAGCTTTGAG 
CAAGATAATT CAGCTAACGG GCTTTACAAC CAAGGCAACG CGCTGATGCA AATGGGCAAA 
CCCGATAAAG CTAAAGAACG CTATCAGGCG GCGCTCGATA AGCAGCCCGA TTTCCCGCAG 
GCAAAGGCTA ACCTTGAGTT AGCGGAAAAA CTGCTGGAGC AACAACAATC GCAGCAAAAT 
GCTAACAACC AAGACAAGCC GTCTCAGGGC GATCAAAACC AACAGGGACA GGATCAAAAC 
GATCAACAGC AGGGTCAAAA CCAGCAGCAA GGTCAGCAAA AAGAGCAGCA ATCCTCGCCA 
AACGACCCAT CTCAAGAGCA ACAAGCTGGC GAAAAGCAGA CGCAGGACAA CACCTCTTCC 
GCTAAAGATA AGCAAGATAA CCCTGAGCAG GAAGCGCAGG ACCAACAGCA AGCCAGTGAT 
GATGCAGCAA AACAAGATGC CAATGCCGGA AATCAACAAC AGCAGTCTCA ACAGCAAGAA 
GCATCGGAGC AAAACGCACA AAATAACCCG ACTGCAGAGT CCTCTGAACC CGCTAGTAAT 
GAGTCCAAAA TGCAGGCAAA GGTCGAAGAT GATAAGTCAA AAGCTAAACA AGAACAGCAA 
CAAGCCGTAG CGCAACATGC GGATAAAGAG AAACAGTCAC CGACAGAGAA AGATCCGCAA 
GCCGCCGTTG AATCTCTCGA ACCGCCGCCT AGCAACAGCG ACCCGTTACC CGCTGACATG 
CAACGGGCAC TGCGCGGCGT GAGTGAGGAT CCACAAGTAT TGCTGCGTAA CAAGATGCAA 
CTCGAATATC AAAAACGCCG TCAAAATGGC CAAATATCAA GGGATAACGA ACAGTGGTGA 

 

Protein sequence

MSLHFIRPEW LLALLPLVII LWMLWRQHAT NSAWNRYIAP HLAKVLVTEG SQKSRRPLHI 
LAFSWFIATL ALAGPALNKQ SLPVFAAEQG RVLVMDMSVS MFATDLAPNR LTQAKFRATD 
LLRSLKEGET GLIAFAGDAF TISPLTRDTG TLLNLLPTLS PEIMPVLGSN LAAALTQAKN 
LLAQGGHLRG DIIVMTDGIT PRQFDEANSV LTGSQYRLAI MGFGSNQGAP IRLPDGQLQR 
DSSNEVAVAK TDFGLLQKLA DNHNGIMIPN RADGEDLVQL QHWLSDSGDA KATDLDGETW 
QDLGPYLALF LLIPALLSFR QGMLASWMLM GFASLLLGAL PQNAHANAWN SLWHTQEQQA 
MQAYQAEDYA SAAQKFETPQ WQGAAQYKAG NFEQALKSFE QDNSANGLYN QGNALMQMGK 
PDKAKERYQA ALDKQPDFPQ AKANLELAEK LLEQQQSQQN ANNQDKPSQG DQNQQGQDQN 
DQQQGQNQQQ GQQKEQQSSP NDPSQEQQAG EKQTQDNTSS AKDKQDNPEQ EAQDQQQASD 
DAAKQDANAG NQQQQSQQQE ASEQNAQNNP TAESSEPASN ESKMQAKVED DKSKAKQEQQ 
QAVAQHADKE KQSPTEKDPQ AAVESLEPPP SNSDPLPADM QRALRGVSED PQVLLRNKMQ 
LEYQKRRQNG QISRDNEQW