| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3088 |
|---|
| Symbol | fadJ |
|---|
| ID | 1170773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 3210691 |
|---|
| End bp | 3212814 |
|---|
| Gene Length | 2124 bp |
|---|
| Protein Length | 707 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637344890 |
|---|
| Product | multifunctional fatty acid oxidation complex subunit alpha |
|---|
| Protein accession | NP_718651 |
|---|
| Protein GI | 24374608 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | [TIGR02440] fatty oxidation complex, alpha subunit FadJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTGG GAAAAACATT TAATTTAACT CGCCGTGAAG ACGGTATCGC CATTTTAACC
ATGGACGTAC CTGGCGAAAC CATGAATACC CTCAAGGCGG AGTTTGGCCC TGAGATCAGT
GAGATCCTGT CTGAGATTAA ACGCGATTCG AGTATCCGTG GCCTAGTGCT GATTTCGGGC
AAAAAAGATT CATTTGTTGC CGGTGCCGAT ATCTCTATGC TCGATGCTTG CCAAACGGCG
GGCGATGCCA AAGCGTTATC CCAGCAAGGG CATGTGGTGT TTAACGAGTT GGAAGCATTA
AACATCCCTG TGGTCGCTGC AATTCATGGT GCTTGCTTGG GCGGCGGTTT AGAGCTAGCG
CTTGCCTGCC ATCAACGTGT GTGCAGTGAT GATGGCAAGA CCATGCTGGG CGTACCTGAA
GTGCAGCTCG GTTTATTACC CGGTGGCGGT GGTACCCAGC GTTTGCCACG CTTGGTGGGG
ATTACCACTG CGCTGGATAT GATGTTGACG GGTAAACAAA TTCGCCCGAA ACAAGCGTTA
AAGATGGGCT TAGTTAACGA TGTGGTGCCA CAAACGATTT TGCTGCAAAC CGCAGTGGAG
ATGGCGCTCG CGGGTAAACA AATAGCTAAG CCAGTTAAAA AATCGCTAGT AAACCAATTG
CTTGAAGGTA CTGGCTTTGG TCGCAACATT ATTTTCGATC AAGCGGCTAA GCAAGTTGCT
AAGAAAACCC AAGGTAACTA CCCAGCGCCA GCAAAGATTA TTGATTGTGT GCGCCAAGGT
ATTGCCAAAG GTATGCAGAA GGGACTGGAA GTCGAAGCCA GCCATTTTGC TGAGCTGGTG
GTGTCGAAAG AATCTGAAGC GCTGCGCAGT ATTTTCTTTG CAACTACAGA GATGAAGAAA
GAAACCGGCG CCGAAGGTGC AACGCCACGT AAAGTCAAAA AAGCCGTGAT CTTAGGTGGC
GGTTTGATGG GAGGTGGTAT TGCCTCTGTC ACTACGACTA AGGCTAAAAT TCCTGCGCGA
GTAAAAGACA TTAACGAAAA GGGCTTAAGC AACGCGCTTT CTTACGCCTA TAAGTTATTG
GATAAAGGCG TGAAACGTCG TCATATGACG CCAGCCGCTC GCGACAATTT AATGGCGCTG
ATGACAACGA CGACCGAATA TAAAGGTGTT AAGGATGCCG ATATTGTTGT TGAAGCGGTA
TTTGAGGATT TAGCGCTTAA ACATCAAATG GTTAAAGATA TTGAGCGTGA ATGCGGTGAG
CACACGATTT TTGCGTCTAA CACCTCATCG TTACCCATTG GTCAAATTGC ACAAGCGGCA
AGCCGTCCTG AAAATGTGAT TGGCTTACAT TACTTCTCAC CGGTAGAAAA AATGCCGCTG
GTGGAAGTGA TTGCCCACGC TAAAACCTCA CCAGAAACCA TTGCCACCAC AGTCGCCTTT
GCCCGTAAAC AGGGTAAAAC GCCAATTGTG GTACAAGACG GTGCGGGGTT TTATGTTAAC
CGCATCCTCG CGCTTTATAT GAACGAAGCC GCACAATTGC TGCTAGAAGG GCAAAGTGTT
GAACATCTCG ATAAAGCGTT AGTGAAGTTT GGTTTCCCCG TTGGCCCAAT TACCTTACTC
GATGAAGTCG GTATTGATGT GGGCGCTAAG ATCTCTCCAA TTCTTGAAAA AGAGCTTGGT
GAACGCTTTA AAGCACCAGC AGCCTTCGAC AAGCTATTAA GCGACGATAG AAAAGGTCGT
AAAAATGGCA AAGGTTTCTA TCAGTATGGC GCTGCCAGCA AGAAAAAAGC TGTGGATGAA
ACCGTGTATG GCGTATTAGG TATCAAGCCT GGTGTCGATA AAGAAATGAG CGCGGTAGCG
GAACGCTGTG TAGTGCAAAT GCTGAATGAA GCAGTGCGCT GCTTAGATGC AGGCATTATT
GCCTCGCCGC GCGATGGTGA TATTGGCGCT ATCTTTGGCA TCGGCTTCCC ACCATTCTTG
GGTGGACCAT TCCATTATAT CGATACTTTA GGCGCGGATA ACTTAGTCAA AATACTTGAA
CGTTATCAAA CACAATATGG CGATCGATTT GAGCCTTGCC AACGGCTTAA GGCTATGGCG
GCAGAAAAAG CTCGCTTCTT CTAA
|
|---|
| Protein sequence | MAVGKTFNLT RREDGIAILT MDVPGETMNT LKAEFGPEIS EILSEIKRDS SIRGLVLISG
KKDSFVAGAD ISMLDACQTA GDAKALSQQG HVVFNELEAL NIPVVAAIHG ACLGGGLELA
LACHQRVCSD DGKTMLGVPE VQLGLLPGGG GTQRLPRLVG ITTALDMMLT GKQIRPKQAL
KMGLVNDVVP QTILLQTAVE MALAGKQIAK PVKKSLVNQL LEGTGFGRNI IFDQAAKQVA
KKTQGNYPAP AKIIDCVRQG IAKGMQKGLE VEASHFAELV VSKESEALRS IFFATTEMKK
ETGAEGATPR KVKKAVILGG GLMGGGIASV TTTKAKIPAR VKDINEKGLS NALSYAYKLL
DKGVKRRHMT PAARDNLMAL MTTTTEYKGV KDADIVVEAV FEDLALKHQM VKDIERECGE
HTIFASNTSS LPIGQIAQAA SRPENVIGLH YFSPVEKMPL VEVIAHAKTS PETIATTVAF
ARKQGKTPIV VQDGAGFYVN RILALYMNEA AQLLLEGQSV EHLDKALVKF GFPVGPITLL
DEVGIDVGAK ISPILEKELG ERFKAPAAFD KLLSDDRKGR KNGKGFYQYG AASKKKAVDE
TVYGVLGIKP GVDKEMSAVA ERCVVQMLNE AVRCLDAGII ASPRDGDIGA IFGIGFPPFL
GGPFHYIDTL GADNLVKILE RYQTQYGDRF EPCQRLKAMA AEKARFF
|
|---|
| |