| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3069 |
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| Symbol | |
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| ID | 1170755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3185596 |
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| End bp | 3188928 |
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| Gene Length | 3333 bp |
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| Protein Length | 1110 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637344873 |
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| Product | hypothetical protein |
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| Protein accession | NP_718633 |
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| Protein GI | 24374590 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTTC GCACTTCGTA TCTTCTTGGC CTAATGGCCA CCATTTTGGC TGTTTCTTCC
ACGACCTCTT TTATTGATCC TGCGATTGCT GCCGATACTC CCAAAATAAA ACCTTTAAAA
ATCATGGGCC CAGACGGACA AATCCGTCAA GTGAATCACC AATATGGCCC TACGACTTCA
AAAGACACGT TTTGGAGTAT TGCGCAAAAA GTGCGCCCTG ATGCCAGCGT CAGTGTTTAT
CAAGTGATGG CTGCAGTATT TGATGCTAAC CCCCATGCCT TTAACTCCGA TAGTTATAAC
AGCCTAGAAC GTGGGATGAT TTTGCTGATC CCTTCGAAAG AAGTGATGCT ATCCATTCCT
AATAGTGTGG CCATTGCCCG CGCTGAACGC AGTGATAAGC AAGTCCGCAA TACCGCTAAA
GTAGCGACTA AGCCGGTAAC TAAGCCGGTA ACGAAGCCCG TCGTTGTCAC TCCGGTGGTT
GAAAATAAAC CTAAGGTTGA AGTTAAACCT GAAGCGACTA AGACCGAAGT CGCTAAAACG
GAGGTCGTGG CAACGCCACC CGCAACTCCC GTCGCGCCGA ATATGGCGAG TTCCGATGTG
AATACTCGCC TTGAGGCCGC GGAGAGCAAA AATTTATCTT TAACTGATGA GTTAGCCAGA
GCACAAGATC AGCTCGCCGT GAGAAATGCC GATGTTGAAG CCCTTAAAGC CAAAATTGAG
GATTTAAATC AACAAATTGC AGTATTAGAA GAAACTTTAC AGGCGAGTAA AAAGCAAAAT
CTAGCACTGA AGGCCGAAGT AGAAGCCGCT CAAGCTCCAT CAGAAACCGA TGCGCAACCA
CAAATACCTG CTGAGCCTGA AGATGTGTGG CGTAACTTGA TGAATAATCC GCTGCTTCTT
GTTGCTGCGG CTGTGATCCC GGCATTATTG CTACTGCTGC TTGTGTTCTG GATGCTTCGT
CGTAAGCGTA ATAAAGAGCG CCGCGAGCTC GCAGCGCAGC AGGTTGCTAT GACCGCAGGC
GCTGCAGGCA TGGCAACAGG CGCATCTGTG CTGGCTATGG ATGACGATGA CATTAACGAC
ATGGCAGTGC ATTTAGATGG CGACCATGCC GATTCCATCG ATAGCCTATT AGATGTCGGT
AGCGTGAGTC TGCAACCCGA GCAGGAAATG ACTGATGGGC ATGAGCAGAT GGATATTGCC
TCTGAAATGT TTATCGACTC TGGTGCTAGT ACCGAGGCTG CGCCGCAATT TGCAGAGGAC
GAAGGCCAAT CCTTGGATGA TCTTTGGGCT GAGGCCATGG GCGATCAAGA GGAAACCTTT
GCTGAAGAAA AAACTAAATC AGGAAACATT CTTGAAGAAG AGGATCTTGA TGCTTTATTG
GCAGGACTTG GCTCAGATGT TAGCAATGAG CCATCAACGA ATGCGGCTTC TGACACTGAA
AACTTTGATG AATTGGCGGA TTTTGATATT CCATCAGAAC CAGCTGCTGC AATTGACTCC
ACCGATGCCG ATCTGGCAGC AGCGATTGCC GCAGAATTAG AGAGTGAACT TGAAAATAAA
CCGTCAGCTG AAACGGCTGA CGATGATATT GATGCTTTGC TTGCAGGCTT TAACACCTCA
GAAGCGACTG ACTCAGTAAC TGATTCTGAG GCAGACGACC TCGATGCTTT ATTAGCGGAT
TTTGACAAGA CGCCTGCTGA AGCGACGCCT GATCTTAGCG ATGAAATTGC CGCAGAATTG
GATGATGACT TAGCTGAATT AGGGGTTGAG CAAACCGATG ATATCGATGC CTTACTGGCG
GACTTTGATA AGCCAGTGGC ACCGGAACCG GATCTGAGCG ATGAAATTGC CGCAGAGCTA
GATGTCGATT TAACTGACAT TGGTGTTAGT GAATCCGATG ATATTGATTC GCTGCTCGCA
AGTTTGGATG CTCCAATACA GCATGATCCT GTGGTTGCTG CTGCCATTGC TGCCGAATTG
GAAGAAGAAT TAAACACCGA GCTGCCCGTT AGTGATGATG ACCTTGACCA GTTGTTGGCG
GGTTTCAATG CCCAAGATAC TGCAGAAGTT CAAACACCAA GTGATATAAA CAACGGCCAT
AGCGATGAGA TTGCCGCTGA GCTAGAAGCG ACATTACCCG AAGAGTTGAC TGCTGCAGAT
GATGATCTTG ACTCCCTTCT CGCCGAGTTT GATGTGCCAG AGCAGGCTGA AGCCGACGCT
GATGAGTTTA ATTTCGACCT TGAAACCACA CACTTAGATA CAGAGGATAA GGCTGAGGAG
GAAGAAGACT TACTCAAAGG CATTGGTGCA GCCCATGCGA TTGATGGTAC GGATGATACC
TTTGAGCTAA GCGACACGAT TGCAGATCGT CGCGATGATG CTAACGAAGC GACAGATGAG
CCAACCTTTA CGGGTTTTGT TGATAATGAA GCGAATAACG TCGAGCTCGC GACTGCAACC
TTAACGGCAG CGACTGCTGC CGCCGCTGCG GCTAAAGTCA AAGAAAAAGA GGCTTCATTC
TTTAACGATT TAAAGGCGAA CAAGAGCAAA GATCCCCATG TACTCGATTG GGATACTGAA
CTTAACTTTG CGCCGACGTC TAGTGCAAAA ACCGAGATCC CTAAGCCTGA ACCTGTGGCA
CCCGTGGAAC CTGCGCCCGT CGATCCGCAA GCGGTTTCTG CGCGTCAACC TTTGGAGTTT
GTATTAGACG AGCCTATTAA GAAGGTAGAA CCTACATTTA CGGTTAACAC TGATAAAGAT
GATGACATCG TTGATGTGGA TTTAGGCCAT GAGTTTGATT TAAAAGCTGA CCTAGATACT
GATGATATTG ATTTAACAGA TGATAGTGTA CTTGCCGCTT TCAGTGCTAA TGTCGATATT
GAGGATGAAG AGGTATTAAC GCCTGAGGAC AGCTTTGCCC TTGATGATGA GCACACTCTT
ACCGTTGATG AAGCATTAGC GGCACTTGAT GCACAGGAAT CTCGCAAGTC GAAGAAATTT
GTGCCAGAGC ACGATTTAAC GCATTTCCAA AATGAGCATG GCTATATCGA CATTGAAAAA
CTGCTCAATG ATGCTGAGCA GGACAGCGTT GAGACAGATC TCTATCCTGA AATGGATGTT
GAGATGAGTG ATGTGGGTGC CCTGATTGGT GATGCCGCGA TGATCGATGT GGACGATGAA
GAAAACTCCG TCAATGCCAA GCTTGATTTA GCCCGCGCCT ATATCGAAAT CGATGACAGT
GACAGTGCTA AAGCGTTGTT ACGAGAAGTC CAAATCGACG GTAACGATCG TCAGCAAGAA
GAAGCGGCCC GCTTACTCAA AGAAATGAGT TAG
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| Protein sequence | MKFRTSYLLG LMATILAVSS TTSFIDPAIA ADTPKIKPLK IMGPDGQIRQ VNHQYGPTTS
KDTFWSIAQK VRPDASVSVY QVMAAVFDAN PHAFNSDSYN SLERGMILLI PSKEVMLSIP
NSVAIARAER SDKQVRNTAK VATKPVTKPV TKPVVVTPVV ENKPKVEVKP EATKTEVAKT
EVVATPPATP VAPNMASSDV NTRLEAAESK NLSLTDELAR AQDQLAVRNA DVEALKAKIE
DLNQQIAVLE ETLQASKKQN LALKAEVEAA QAPSETDAQP QIPAEPEDVW RNLMNNPLLL
VAAAVIPALL LLLLVFWMLR RKRNKERREL AAQQVAMTAG AAGMATGASV LAMDDDDIND
MAVHLDGDHA DSIDSLLDVG SVSLQPEQEM TDGHEQMDIA SEMFIDSGAS TEAAPQFAED
EGQSLDDLWA EAMGDQEETF AEEKTKSGNI LEEEDLDALL AGLGSDVSNE PSTNAASDTE
NFDELADFDI PSEPAAAIDS TDADLAAAIA AELESELENK PSAETADDDI DALLAGFNTS
EATDSVTDSE ADDLDALLAD FDKTPAEATP DLSDEIAAEL DDDLAELGVE QTDDIDALLA
DFDKPVAPEP DLSDEIAAEL DVDLTDIGVS ESDDIDSLLA SLDAPIQHDP VVAAAIAAEL
EEELNTELPV SDDDLDQLLA GFNAQDTAEV QTPSDINNGH SDEIAAELEA TLPEELTAAD
DDLDSLLAEF DVPEQAEADA DEFNFDLETT HLDTEDKAEE EEDLLKGIGA AHAIDGTDDT
FELSDTIADR RDDANEATDE PTFTGFVDNE ANNVELATAT LTAATAAAAA AKVKEKEASF
FNDLKANKSK DPHVLDWDTE LNFAPTSSAK TEIPKPEPVA PVEPAPVDPQ AVSARQPLEF
VLDEPIKKVE PTFTVNTDKD DDIVDVDLGH EFDLKADLDT DDIDLTDDSV LAAFSANVDI
EDEEVLTPED SFALDDEHTL TVDEALAALD AQESRKSKKF VPEHDLTHFQ NEHGYIDIEK
LLNDAEQDSV ETDLYPEMDV EMSDVGALIG DAAMIDVDDE ENSVNAKLDL ARAYIEIDDS
DSAKALLREV QIDGNDRQQE EAARLLKEMS
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