| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3061 |
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| Symbol | topB |
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| ID | 1170747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3175740 |
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| End bp | 3177848 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637344866 |
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| Product | DNA topoisomerase III |
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| Protein accession | NP_718626 |
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| Protein GI | 24374583 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCTCT ATATTGCCGA AAAACCAAGT CTTGGGCGTG CTATTGCCGA TGTGTTGCCA
AAACCCCATA AAAAGGGTGA AGGTTTTATT GAAGACGCAA ACGGTAACTG TGTGTCTTGG
TGTGTAGGAC ATTTACTCGA ACAGGCCGAG CCTGATGCCT ATAATCCCGA CTTTAAGTCG
TGGAAATTTG AGCATTTACC CATAGTGCCT GAAAAGTGGC AGCTCAAACC TAAGGCTGCG
ACCCGCAGCC AACTTACTGT ACTGAAAAAA TTAATCAAGC AGGCTGATAC CTTAGTTAAT
GCGGGTGATC CTGATCGAGA AGGCCAGTTA TTGGTTGATG AAGTGATTGC CTATTTGGGG
GTCACCGGTG ATAAGTTGCA GCAAACGCAG CGACTCCTTA TCAGCGACTT AAACCCTCAG
GCGGTTAAGC GTGCCTTGTC GCAACTGCGC AGTAACCGTG AGTTTATTCC TTTGTCGACT
TCGGCATTAG CGCGCAGCCG CGCCGACTGG CTCTATGGCA TGAATATGAC GCGAGCCTAC
ACCATCCAAG GGAAAAAGGT GGGTTATCAG GGCGTGCTAT CTGTAGGACG TGTGCAAACC
CCGCTCCTAG GGCTTATTGT TCGCCGTGAT GAGGAAATCG CCCATTTTCA ATCTAAACCC
TTCTATGAAG TTTTGGCTCA CTTAGTCACG GATAAACAGC AATTTTTTAG TGCTAAATGG
CAACCTAGCG AAGCCTGTCA ACCCTATATG GACGATGAAG GTCGTGTTCT TTCGAAGGGA
TTGGCACAAA ATGTGGTTCG AAGAATTACC GATAAACCGG CCAAAGTGAC CCAGTTAAGC
ACTAAGGATA AGCAGCAAAG TGCTCCCTTA CCTTACAGTT TATCGGCACT GCAAATTGAT
GCGGCCAAGC GGTTTGGGAT GAGCGCCAAG GAGGTTCTTG ATACCTGCCA GAGTTTATAT
GAGCGCCATA AACTGATTAC CTATCCACGC TCCGATAGTC GTTATCTGCC TACCGAGCAA
CATGGGCTGG CAAGTTCAGT GTTAAACGCT ATTACATCGG GTGCGCCCGA GTTAGTTGCC
CACTCTGAGG CACCGAATCC TCGGCTTAAA TCTAAGGCGT GGGATGATAA AAAAGTCGAT
GCCCACCATG CCATTATCCC AACGGAAAAA CAGCCTAATT TAGGCAGTTT AAGTCAGCGG
GAAAGACAGC TTTATCTGCA TATTGCCCGA CAGTATTTGG CGCAGTTTTA CCCTGCCTAT
TGCTACAGTG AAACGGCGGT TGAAGTGACG ATTGAAGGTG GCCTCTTTAA AACGAAGGCA
AGACAGGATA AGTCCCTTGG GTGGAAACAG TTGTTTGCTA GAGAAGAGGG CGAGCGAAAA
GACACTTCGA ACACAGAGAC CTTTGCACAA GACGACAAGG ATAAAGATGA AGGGGAATAT
GCTGGCCAGT TACCGCCTCT CATCTTAGGG CAAGTTCTTC ATTGTAACCA AGGAGAATTG
GTCGAGAAGC AAACCCAGCC GCCTAAAGCT TTTACCGATG CCACCTTACT GGGCGCCATG
ACGGGGATTA ATCGCTATGT AACTGATCCT GAGATCCGTA AAATTTTAAA AGAAACCGAT
GGACTAGGAA CTGAAGCGAC TCGAGCAGGG ATTATCGAGT TGCTGTTTAA ACGGGGCTTT
ATTCAGCGTC AGGGTAAGTC GATTGTTGCA ACTGAGGTGG GAAAAGGCTT AATTAATAGC
CTGCCACTTA GCGCCACTAC ACCTGATATG ACGGCATTAT GGGAGGCAAG CCTTAATGGT
ATTTGCCACA AAGACATCTC CTATCAAGGA TTTATGCAGC CACTGCTAGG GACGCTTCAT
TCGTTGATCC AAAATGCTGG CGCCCAATTA CCCTCAGCCC TCAATGGCCT AAAAGGACAG
GGTTTTAAGC GTGCCGCTAC TAAAAAGTCC GGTTATCGAA AAGCGGGAGT CAGAGGCGCT
GCTGGCGGGA AAAAAGCTGG AACGGGCGCT AAAAATGCTA GAAATTCAGC CGCAGCATCT
TCCACATCCA CAACAGCTAA ACCGACCGTC CCTAGACGGC GAACGAGCAA AGCGACCGCC
CAAGCCTGA
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| Protein sequence | MILYIAEKPS LGRAIADVLP KPHKKGEGFI EDANGNCVSW CVGHLLEQAE PDAYNPDFKS
WKFEHLPIVP EKWQLKPKAA TRSQLTVLKK LIKQADTLVN AGDPDREGQL LVDEVIAYLG
VTGDKLQQTQ RLLISDLNPQ AVKRALSQLR SNREFIPLST SALARSRADW LYGMNMTRAY
TIQGKKVGYQ GVLSVGRVQT PLLGLIVRRD EEIAHFQSKP FYEVLAHLVT DKQQFFSAKW
QPSEACQPYM DDEGRVLSKG LAQNVVRRIT DKPAKVTQLS TKDKQQSAPL PYSLSALQID
AAKRFGMSAK EVLDTCQSLY ERHKLITYPR SDSRYLPTEQ HGLASSVLNA ITSGAPELVA
HSEAPNPRLK SKAWDDKKVD AHHAIIPTEK QPNLGSLSQR ERQLYLHIAR QYLAQFYPAY
CYSETAVEVT IEGGLFKTKA RQDKSLGWKQ LFAREEGERK DTSNTETFAQ DDKDKDEGEY
AGQLPPLILG QVLHCNQGEL VEKQTQPPKA FTDATLLGAM TGINRYVTDP EIRKILKETD
GLGTEATRAG IIELLFKRGF IQRQGKSIVA TEVGKGLINS LPLSATTPDM TALWEASLNG
ICHKDISYQG FMQPLLGTLH SLIQNAGAQL PSALNGLKGQ GFKRAATKKS GYRKAGVRGA
AGGKKAGTGA KNARNSAAAS STSTTAKPTV PRRRTSKATA QA
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