| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3059 |
|---|
| Symbol | |
|---|
| ID | 1170745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 3172709 |
|---|
| End bp | 3174235 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637344864 |
|---|
| Product | formate hydrogenlyase transcriptional activator, putative |
|---|
| Protein accession | NP_718624 |
|---|
| Protein GI | 24374581 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAC ACTTTTATTA CGAATCAACC TTAAGGCTCT GTAGTAGTCT GCAACTGGAG
AAATCCCTAC AGAGCTACTT TGAGTTTATT CGGGATGAAC TGCCCATTGA TGGGCTATAT
GTGAATATTT TTCGCAAACA ATTTAATGAT ATACAGTTTA TCGCCCATGT TGATGAGACC
CATTGCTGCA CCTTAGACAA GTGCATTCCC ATCCCTGAAC AAATGGCACA ATTCCTAGAA
GATCCTGAGC GCCCAAGGGT CAGAATTGTT AATGATATTG AGCATGATCC TGTTACTTCA
TTAGTCGCGC CTAAAGTGAT AAACCATATT CGCTCACTGA TTATTCTGCG AATGTCGATA
GAAAATACTC ACCTTGGGAT AGTCGGCTTT TATGCCAAAA CCACAGGCGT ATTTAGACCA
CGCCATGCCG ACCTCATTGC GCCGCATATG CAAACCTTAG CGCTGATCAC GGCATTAAAT
CTAAGGGGCC GTAATTTACT CAAGGAAAAC GAAGCGCTCT CGAAACAAAA TGTCAGTCTG
CGTCGCACCT TAGATGTTCA AAATGGCGTT GTGGGTGCCA ACTCGGGACT CAAACAGGTG
ATGCAACAGG TGCAATCCAT CGCCAAAATC AATACGACAG TCTTGATGCT GGGCGAAACT
GGTTGCGGCA AGGAAGTGAT CGCCAATGCC ATCCACGAAT TGTCGGAACG TGCAGGTAAA
CCATTTATCA AAGTAAACTG TGGCGCCATT CCTGATACTT TGATTGACTC CGAGCTGTTT
GGTTATGAAA AAGGCGCCTT TACGGGTGCA GAATCCCGCA AGATTGGCTA CTTTGAACAA
GCCAATGGCG GCACGATTTT TTTAGATGAG ATAGGTGAGC TGCCGCTTTC AGCGCAAGTT
CGGCTTTTGC GAGTATTACA AAATAGCTGT ATCACCCGCG TTGGCGGCCA CGATGCGGTG
CAACTCGATA TTCGCATTAT CGCGGCGACC CACAGAAACC TTCAAGCTAT GGTGCACAGG
GAGGTGTTTC GTGAAGATCT CTGGTATCGA CTGGCGATTT TCCCGATCGA AATCCCGTCA
TTAAGACAAA GACGTACAGA CATTCCCCTA CTTGTGCAAC ATTTTATTGA GCAGCTGAGT
GCCAAGTTTA ATTTGCCGCA GTTGCCAAGA ATTGCACCAG ACCAACTGAA TATCCTCAAT
CAATATGGCT GGCCGGGCAA TGTGCGAGAA CTTATCAACG TACTTGAGCG CGCCATGATC
CAGCATCCTG CTGGGCCACT CGACTTTCGT TTTCTGGCAC CACAAAGCTG TGAAGAAGTG
AAAACCCCAT CCAATCAAAC CGTGATTATC GACCCAAGCC ATGCCACCGA TAAATTGGTG
CCGCTGGATG TGATGACCAA AAAATACATC AGCCATGCCT TAAGGATCAC AGGGGGCAAA
CTGTATGGCC CAGGTGGTGC GGCGGAGTTA TTGGACATTA ATGCCAATAC GCTGCGCAGT
AAAATGAAGA AGTTAGGGAT TGTGTAA
|
|---|
| Protein sequence | MEKHFYYEST LRLCSSLQLE KSLQSYFEFI RDELPIDGLY VNIFRKQFND IQFIAHVDET
HCCTLDKCIP IPEQMAQFLE DPERPRVRIV NDIEHDPVTS LVAPKVINHI RSLIILRMSI
ENTHLGIVGF YAKTTGVFRP RHADLIAPHM QTLALITALN LRGRNLLKEN EALSKQNVSL
RRTLDVQNGV VGANSGLKQV MQQVQSIAKI NTTVLMLGET GCGKEVIANA IHELSERAGK
PFIKVNCGAI PDTLIDSELF GYEKGAFTGA ESRKIGYFEQ ANGGTIFLDE IGELPLSAQV
RLLRVLQNSC ITRVGGHDAV QLDIRIIAAT HRNLQAMVHR EVFREDLWYR LAIFPIEIPS
LRQRRTDIPL LVQHFIEQLS AKFNLPQLPR IAPDQLNILN QYGWPGNVRE LINVLERAMI
QHPAGPLDFR FLAPQSCEEV KTPSNQTVII DPSHATDKLV PLDVMTKKYI SHALRITGGK
LYGPGGAAEL LDINANTLRS KMKKLGIV
|
|---|
| |