Gene SO_3023 details

Gene Information

• Locus tag: SO_3023
• Symbol: trpB
• ID: 1170710
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 3134866
• End bp: 3136056
• Gene Length: 1191 bp
• Protein Length: 396 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 637344832
• Product: tryptophan synthase subunit beta
• Protein accession: NP_718591
• Protein GI: 24374548
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0133] Tryptophan synthase beta chain
• TIGRFAM ID: [TIGR00263] tryptophan synthase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACAGT TAAAGCTTAA CCCTTATTTC GGCGAATACG GTGGTATGTA TGTACCACAG 
ATTTTAGTCC CAGCCCTCAA GCAACTCGAA AGTGCCTTTG TTGAAGCGCA AACCGATGAG 
TCCTTCCAAG CCGAGTTTAC CGACTTACTG AAAAACTACG CGGGCCGCCC TACTGCGCTC 
ACCTTAACCC GCAATTTAAG CCCCAATCCC ATGGTAAAAA TCTACCTCAA GCGGGAAGAT 
TTACTCCACG GCGGCGCACA TAAAACCAAC CAAGTGCTAG GCCAAGCGTT ACTGGCTAAA 
CGTATGGGTA AAAAGGAAAT TATTGCCGAA ACCGGCGCAG GCCAACACGG TGTTGCCACC 
GCACTTGCCT GTGCACTGCT GGGATTAAAA TGCAAAGTGT ATATGGGCGC GAAAGACGTT 
GCCCGCCAAT CACCCAACGT ATTTAGAATG CGGCTGATGG GCGCCGAGGT TATCCCTGTG 
ACCTCTGGTT CTGCCACCTT GAAAGATGCC TGTAACGAGG CGATGCGCGA CTGGTCTGGC 
AGTTACGAAA AAGCCCACTA TCTGCTCGGC ACAGCTGCTG GGCCACATCC GTTTCCGACC 
ATAGTGCGTG AATTCCAACG TATTATTGGT GAAGAAACCA AAAAACAAAT ACTTGAGCGC 
GAAGGTCGCC TGCCCGATGC AGTCATCGCC TGTGTCGGCG GCGGTTCCAA TGCTATCGGT 
ATGTTTGCCG ACTTTATAGA TGAAACCAAT GTCGAGCTGA TTGGGGTCGA GCCTGCGGGT 
AAAGGTATTG ATACCCATAT GCATGGCGCG CCGTTAAAGC ACGGTAAAAC GGGGATTTTC 
TTTGGCATGA AAGCCCCACT CATGCAGGAC AGCGAGGGCC AAATCGAAGA ATCTTACTCG 
ATTTCAGCAG GATTAGACTT CCCCTCGGTC GGCCCACAGC ATGCCCATTT GAACGCCATC 
GGCCGCGCCC GTTATGAATC GGCCACCGAC GATGAAGCCC TCGAAGCCTT CCAATTACTG 
GCTCGCTGTG AAGGGATTAT TCCGGCACTC GAATCGGCCC ACGCCCTCGC CTATGCACTG 
CGTCTGGCGA AAGAGTGCAC CAAAGAAACC ATTTTGGTTG TCAACCTCTC AGGCCGAGGC 
GATAAGGATA TTTTCACTGT GTCAGACATT TTAAATGGTA AAGAGGAATA A 

 

Protein sequence

MSQLKLNPYF GEYGGMYVPQ ILVPALKQLE SAFVEAQTDE SFQAEFTDLL KNYAGRPTAL 
TLTRNLSPNP MVKIYLKRED LLHGGAHKTN QVLGQALLAK RMGKKEIIAE TGAGQHGVAT 
ALACALLGLK CKVYMGAKDV ARQSPNVFRM RLMGAEVIPV TSGSATLKDA CNEAMRDWSG 
SYEKAHYLLG TAAGPHPFPT IVREFQRIIG EETKKQILER EGRLPDAVIA CVGGGSNAIG 
MFADFIDETN VELIGVEPAG KGIDTHMHGA PLKHGKTGIF FGMKAPLMQD SEGQIEESYS 
ISAGLDFPSV GPQHAHLNAI GRARYESATD DEALEAFQLL ARCEGIIPAL ESAHALAYAL 
RLAKECTKET ILVVNLSGRG DKDIFTVSDI LNGKEE