Gene SO_3021 details

Gene Information

• Locus tag: SO_3021
• Symbol: trpD
• ID: 1170708
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 3132201
• End bp: 3133244
• Gene Length: 1044 bp
• Protein Length: 347 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 637344830
• Product: anthranilate phosphoribosyltransferase
• Protein accession: NP_718589
• Protein GI: 24374546
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0547] Anthranilate phosphoribosyltransferase
• TIGRFAM ID: [TIGR01245] anthranilate phosphoribosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGAGA CATCAATCCA GCCCCTGCTC GATATTTTAT TCCAAGGTAA AGCATTGACC 
CGTGAGCAAA CCGCCAGCCT CTTTAGCGTG CTGATCCAAG GAGAAATGAA TGAGACAGTG 
ATGGCGGGCA TGTTAATGGC GCTTAAAATT CGTGGCGAAA CCATAGAAGA AATCAGCGGT 
GCCGCCGACG CCATGCGTGC AGCCGCTAAA CCTTTCCCTT ATCCCGAATC AAGCCGCTCC 
CAAGGGGTTA TCGATATTGT CGGTACCGGT GGCGATGGGT TTAATACCAT TAATATTTCT 
ACCACTGCCG CCTTCGTCGC CGCAGCCGCT GGCGCAAAAG TGGCGAAACA CGGTAATCGC 
TCGGTATCGA GCAAGTCGGG CTCGTCAGAT TTACTCGCCC AATTTGGCAT CGATTTAACC 
ATGTCACCTG AACTTGCGAG CCACTGCCTT GAGGCGCTCA ATCTCTGTTT TCTGTTCGCA 
CCCCACTACC ATGGCGGTGT AAAGCATGCA GTTCCCGTCA GACAAACACT CAAAACCCGC 
ACATTATTCA ATGTGTTAGG ACCATTGATT AACCCCGCAC GCCCAGAGTT TATGTTACTT 
GGCGTATACA GTGCAGAACT TGTCACTCCT ATCGCCCGCG TACTGCAAGC CCTTGGCACT 
CAAAGAGCCA TGGTGGTACA TGGTAGCGGT TTAGATGAAG TGGCGCTCCA TGGCAGCACA 
CAGGTCGCCG AACTTAAAGA CGGTGAGATT ATTGAATATC AATTAACGCC TGCCGATTTT 
GGTGTCCCTC AAGCCCACAT TAGTGAGCTT GAAGGCGGAG AGCCTGCCCA CAACGCCCTG 
ATCACCCAAC AGATTTTACA AGGACACGGC TGCGATGCCC ACACCCACGC GGTTGCCATC 
AATGCGGGTT GTGCCTTATA TCTATGTGGC TTGTCGGAGT CCGTAAAAAT GGGGACCGCC 
CTTGCGCTCA GCACCATAAA AACCGGTAAA GCCTATGAAT TACTGCATAA GCTCGCTACA 
GTCAGTAGCC AATCACAGGA ATAA 

 

Protein sequence

MSETSIQPLL DILFQGKALT REQTASLFSV LIQGEMNETV MAGMLMALKI RGETIEEISG 
AADAMRAAAK PFPYPESSRS QGVIDIVGTG GDGFNTINIS TTAAFVAAAA GAKVAKHGNR 
SVSSKSGSSD LLAQFGIDLT MSPELASHCL EALNLCFLFA PHYHGGVKHA VPVRQTLKTR 
TLFNVLGPLI NPARPEFMLL GVYSAELVTP IARVLQALGT QRAMVVHGSG LDEVALHGST 
QVAELKDGEI IEYQLTPADF GVPQAHISEL EGGEPAHNAL ITQQILQGHG CDAHTHAVAI 
NAGCALYLCG LSESVKMGTA LALSTIKTGK AYELLHKLAT VSSQSQE