Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_2953 |
Symbol | H |
ID | 1170641 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3090474 |
End bp | 3093218 |
Gene Length | 2745 bp |
Protein Length | 914 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637344764 |
Product | prophage LambdaSo, tail length tape meausure protein |
Protein accession | NP_718522 |
Protein GI | 24374479 |
COG category | [S] Function unknown |
COG ID | [COG5281] Phage-related minor tail protein |
TIGRFAM ID | [TIGR01541] phage tail tape measure protein, lambda family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGAATA AGTCACTCGG CACACTCACG CTAAACATGG TTGCCGAAAC AGGCAGCTTT GTTGAAGGCC AAACTAAGGC AGAACGCGCC TTAGCAAAAA CCGAAGCGGC CGCAGCTAAA CAAAAAGCTG AACTTAACCG CTTACTTGGG CAAATTGATC CGCTAGTTGC TGAGTACAGC AAGCTCGACA AAATGGAGCA GCAGCTCCGC CGCCACCGTG AATCAGGATC ATTACAACAA GCCGAATACG ACACCTACAG CAAAAAAATT GCGCAGATGC GCACTGAGGT AGGTAAAGCC GGGGTTGAGT ACGATAAAAC AGGCATGTCA GCCAAGCAAA TGGCGTTTGC TACACGCGGC CTTCCTGCTC AATTCACCGA TATCGCCGTA TCGCTGCAAG CAGGGCAAAA CCCGATGACG GTGTTCTTGC AGCAAGGTGG CCAGCTTAAG GATATGTTTG GCGGGGTTGG CCCTGCTGCT AAAGCCATGG GCGGTTATAT TATGGGTTTA ATCAACCCAT TTACCGTTGC CGCCTCTGCC GCTGGTGTAA TGGCACTGGC TTATTATCAG GGCAGTATCG AGGCCGACAG GCTACGCAAC GCGCTGATAT TAACTGGCAA CTCAGCAGGT ACAACGACTG ACCAATTGAT GGAAGCCGCC AAGCGCATTG ATGCCATTAG CGGTACCCAA CGCCAAGCCT CTGCCGCACT GGCAGAAGTT GCCAACACTG GCAAGTTTAC CGCCAGCCAA ATTGAGCTAG TCGGCCTTGC CGCCGTAAAA ATGGAAAATA CCACTGGTAA AGCCGTTGCC GATACGGTGG CGGAATTTGT CAAACTGGCA GATGACCCGG TAAAAGCCGC TGAAGAACTT AACAAAAAGT TTAACTTCCT CAGCGCATCG ACCTATGAGC AAATTGTCGC CTTAAAAGAA GCGGGTAAAT CAACCGCAGC TGCAGAGCTA GCCTTTAGCG CCTATAGCAA TGCCATTGAT CAGCGCACCA AGGAGATCAC CGGCAACCTT GGTTCAATCG AAAAAGCATG GAAGGCAATT AAATCAGGTG CTGTTGAATC GTGGGATCAA ATACTCAATA TCGGTCGTGC CGATACGCTC GAACAGCAGT ATGCCGCATT ATCAAAACGT ATCGAAGATC TGCGTCCTAA AACAAAGCAA GGTGAATGGG GTTACGGCCT AGCTAGAGAA GAATTAAAGG CACTGGAAGC TGAGCGTGAT TCAGTAATGG CACTGATGAA GACTGAACGT GACCGCAGTG CAGAGCAGGC AAAACGCGCC AAACTAAACC AAGACTCAAT CGAAGCTCAA CGTGCCATTG CCAAAGTTAC CGAAGAAACC CTTACCAACG AGCAAAAACG CAATAAGGCG ATTAAGGAAT ACAACGACAA TATCGAGAAG GTGCGCAAAG CCGATCCAAA TAGCGCATTG CTCAATGCCG ATAAAATCAA ACGTGATTTG GCATCGATTG AAGAAAAGTT TAAAGACTCT GCCAAAACCA CCAAAGCCTT TGCCGATGAT GCTGCAACTA GCTACCTTAT GCGCCTGCGT GAAACCCAAG CAGGCTTGCA AGGCCAGTTA GATAGAAACA CTAAGCTTAC GCAATCACAA AAAGAGCTAT TGCAGTTTGA GCAGCAAATT GCCGATATCA AAAACAAAGA TGTACTCACC GCCCAGCAAA AAAGCCTGCT GGCTGAGCAA TCGGTGATCC GCGCCCAGCT TGAAAAAAAC GTGGCCCTCG ATGAAGAACT TAAAAAACGT AATGAAGCGC TACGCCTGCA AAGCTACAGC GCCAACCTTG CAGCCAACTT AGCCGCAGAA CAACAACGCA ATGCCGACAA GCTAGCCAGC TTTGGCTTAG GCGATAAAGC ACAACAACGC CTAGGTGATC GCCAAAGCAT TGAGCGTGAC ATCGAACGCG CCCAAGGTAA GGCATTGTCT GACAACCTTG CAGGCCGCAC CACCGATGAA GAGTATCAAG CCCAGCTGGT CATGCTTAAG CAAAACCTCA GCGACAGATT AGCCGCGCAG AATGAGTACT ACATTGCCCT CGATGCCAAG CAAGCTGACT GGACAAATGG TGCCCGTTCA TCAATGCAAA ACTACATTGA TGCCGCAGCG GATATGGCTG GCCAAACTGA AAAACTCTTT GATAGCGCCT TTGGTGGCAT GACTGACGCC TTAACCGACT TTGTAACCAC AGGTAAGGCC GACTTTGCCT GGTTAACCAA GTCTATCTTG GCTGACATTG CAAAAATCGC CATGCAAAAA GCGATTGCAG GTATCGCCAG CAGTATTTTT GGGGGATTCT CTGAAGGTGG CGCCGTTGGT TATTCATCCG GTGGTTACAC AGGCGCAGGC GGTAAATATG AGCCTGCAGG TATTGTTCAT CGCGGCGAGG TGGTTTGGTC ACAACGAGAT GTAGCCCGTG CCGGTGGCGT GGCCACAGTC GAAGCTATGC GCAAAGGTCA TAAAGGTTAC GACAATGGCG GCATAGTAGG CGGCGCGGCC TATAACGGCG TACCAGCCTC GGCAACAGCT GGCGCTGGCG TGGTGCATGT TGAGGTGAAT ATCGATCAAA GTGGTAACGC AACCACCACG GCCGATACGC CAGCATTAAG CCAGTTCGGC AGCGAGCTAG GCAAGTTTGT TGAACAAAAA TATCGCCAAT TGCTCGCCAA TGACCTAAAG CCTAACGGCC AAATTGGTCG CACCATGGCT GGAGGGTATC GCTAA
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Protein sequence | MANKSLGTLT LNMVAETGSF VEGQTKAERA LAKTEAAAAK QKAELNRLLG QIDPLVAEYS KLDKMEQQLR RHRESGSLQQ AEYDTYSKKI AQMRTEVGKA GVEYDKTGMS AKQMAFATRG LPAQFTDIAV SLQAGQNPMT VFLQQGGQLK DMFGGVGPAA KAMGGYIMGL INPFTVAASA AGVMALAYYQ GSIEADRLRN ALILTGNSAG TTTDQLMEAA KRIDAISGTQ RQASAALAEV ANTGKFTASQ IELVGLAAVK MENTTGKAVA DTVAEFVKLA DDPVKAAEEL NKKFNFLSAS TYEQIVALKE AGKSTAAAEL AFSAYSNAID QRTKEITGNL GSIEKAWKAI KSGAVESWDQ ILNIGRADTL EQQYAALSKR IEDLRPKTKQ GEWGYGLARE ELKALEAERD SVMALMKTER DRSAEQAKRA KLNQDSIEAQ RAIAKVTEET LTNEQKRNKA IKEYNDNIEK VRKADPNSAL LNADKIKRDL ASIEEKFKDS AKTTKAFADD AATSYLMRLR ETQAGLQGQL DRNTKLTQSQ KELLQFEQQI ADIKNKDVLT AQQKSLLAEQ SVIRAQLEKN VALDEELKKR NEALRLQSYS ANLAANLAAE QQRNADKLAS FGLGDKAQQR LGDRQSIERD IERAQGKALS DNLAGRTTDE EYQAQLVMLK QNLSDRLAAQ NEYYIALDAK QADWTNGARS SMQNYIDAAA DMAGQTEKLF DSAFGGMTDA LTDFVTTGKA DFAWLTKSIL ADIAKIAMQK AIAGIASSIF GGFSEGGAVG YSSGGYTGAG GKYEPAGIVH RGEVVWSQRD VARAGGVATV EAMRKGHKGY DNGGIVGGAA YNGVPASATA GAGVVHVEVN IDQSGNATTT ADTPALSQFG SELGKFVEQK YRQLLANDLK PNGQIGRTMA GGYR
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