Gene SO_2953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2953 
Symbol
ID1170641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp3090474 
End bp3093218 
Gene Length2745 bp 
Protein Length914 aa 
Translation table11 
GC content50% 
IMG OID637344764 
Productprophage LambdaSo, tail length tape meausure protein 
Protein accessionNP_718522 
Protein GI24374479 
COG category[S] Function unknown 
COG ID[COG5281] Phage-related minor tail protein 
TIGRFAM ID[TIGR01541] phage tail tape measure protein, lambda family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGAATA AGTCACTCGG CACACTCACG CTAAACATGG TTGCCGAAAC AGGCAGCTTT 
GTTGAAGGCC AAACTAAGGC AGAACGCGCC TTAGCAAAAA CCGAAGCGGC CGCAGCTAAA
CAAAAAGCTG AACTTAACCG CTTACTTGGG CAAATTGATC CGCTAGTTGC TGAGTACAGC
AAGCTCGACA AAATGGAGCA GCAGCTCCGC CGCCACCGTG AATCAGGATC ATTACAACAA
GCCGAATACG ACACCTACAG CAAAAAAATT GCGCAGATGC GCACTGAGGT AGGTAAAGCC
GGGGTTGAGT ACGATAAAAC AGGCATGTCA GCCAAGCAAA TGGCGTTTGC TACACGCGGC
CTTCCTGCTC AATTCACCGA TATCGCCGTA TCGCTGCAAG CAGGGCAAAA CCCGATGACG
GTGTTCTTGC AGCAAGGTGG CCAGCTTAAG GATATGTTTG GCGGGGTTGG CCCTGCTGCT
AAAGCCATGG GCGGTTATAT TATGGGTTTA ATCAACCCAT TTACCGTTGC CGCCTCTGCC
GCTGGTGTAA TGGCACTGGC TTATTATCAG GGCAGTATCG AGGCCGACAG GCTACGCAAC
GCGCTGATAT TAACTGGCAA CTCAGCAGGT ACAACGACTG ACCAATTGAT GGAAGCCGCC
AAGCGCATTG ATGCCATTAG CGGTACCCAA CGCCAAGCCT CTGCCGCACT GGCAGAAGTT
GCCAACACTG GCAAGTTTAC CGCCAGCCAA ATTGAGCTAG TCGGCCTTGC CGCCGTAAAA
ATGGAAAATA CCACTGGTAA AGCCGTTGCC GATACGGTGG CGGAATTTGT CAAACTGGCA
GATGACCCGG TAAAAGCCGC TGAAGAACTT AACAAAAAGT TTAACTTCCT CAGCGCATCG
ACCTATGAGC AAATTGTCGC CTTAAAAGAA GCGGGTAAAT CAACCGCAGC TGCAGAGCTA
GCCTTTAGCG CCTATAGCAA TGCCATTGAT CAGCGCACCA AGGAGATCAC CGGCAACCTT
GGTTCAATCG AAAAAGCATG GAAGGCAATT AAATCAGGTG CTGTTGAATC GTGGGATCAA
ATACTCAATA TCGGTCGTGC CGATACGCTC GAACAGCAGT ATGCCGCATT ATCAAAACGT
ATCGAAGATC TGCGTCCTAA AACAAAGCAA GGTGAATGGG GTTACGGCCT AGCTAGAGAA
GAATTAAAGG CACTGGAAGC TGAGCGTGAT TCAGTAATGG CACTGATGAA GACTGAACGT
GACCGCAGTG CAGAGCAGGC AAAACGCGCC AAACTAAACC AAGACTCAAT CGAAGCTCAA
CGTGCCATTG CCAAAGTTAC CGAAGAAACC CTTACCAACG AGCAAAAACG CAATAAGGCG
ATTAAGGAAT ACAACGACAA TATCGAGAAG GTGCGCAAAG CCGATCCAAA TAGCGCATTG
CTCAATGCCG ATAAAATCAA ACGTGATTTG GCATCGATTG AAGAAAAGTT TAAAGACTCT
GCCAAAACCA CCAAAGCCTT TGCCGATGAT GCTGCAACTA GCTACCTTAT GCGCCTGCGT
GAAACCCAAG CAGGCTTGCA AGGCCAGTTA GATAGAAACA CTAAGCTTAC GCAATCACAA
AAAGAGCTAT TGCAGTTTGA GCAGCAAATT GCCGATATCA AAAACAAAGA TGTACTCACC
GCCCAGCAAA AAAGCCTGCT GGCTGAGCAA TCGGTGATCC GCGCCCAGCT TGAAAAAAAC
GTGGCCCTCG ATGAAGAACT TAAAAAACGT AATGAAGCGC TACGCCTGCA AAGCTACAGC
GCCAACCTTG CAGCCAACTT AGCCGCAGAA CAACAACGCA ATGCCGACAA GCTAGCCAGC
TTTGGCTTAG GCGATAAAGC ACAACAACGC CTAGGTGATC GCCAAAGCAT TGAGCGTGAC
ATCGAACGCG CCCAAGGTAA GGCATTGTCT GACAACCTTG CAGGCCGCAC CACCGATGAA
GAGTATCAAG CCCAGCTGGT CATGCTTAAG CAAAACCTCA GCGACAGATT AGCCGCGCAG
AATGAGTACT ACATTGCCCT CGATGCCAAG CAAGCTGACT GGACAAATGG TGCCCGTTCA
TCAATGCAAA ACTACATTGA TGCCGCAGCG GATATGGCTG GCCAAACTGA AAAACTCTTT
GATAGCGCCT TTGGTGGCAT GACTGACGCC TTAACCGACT TTGTAACCAC AGGTAAGGCC
GACTTTGCCT GGTTAACCAA GTCTATCTTG GCTGACATTG CAAAAATCGC CATGCAAAAA
GCGATTGCAG GTATCGCCAG CAGTATTTTT GGGGGATTCT CTGAAGGTGG CGCCGTTGGT
TATTCATCCG GTGGTTACAC AGGCGCAGGC GGTAAATATG AGCCTGCAGG TATTGTTCAT
CGCGGCGAGG TGGTTTGGTC ACAACGAGAT GTAGCCCGTG CCGGTGGCGT GGCCACAGTC
GAAGCTATGC GCAAAGGTCA TAAAGGTTAC GACAATGGCG GCATAGTAGG CGGCGCGGCC
TATAACGGCG TACCAGCCTC GGCAACAGCT GGCGCTGGCG TGGTGCATGT TGAGGTGAAT
ATCGATCAAA GTGGTAACGC AACCACCACG GCCGATACGC CAGCATTAAG CCAGTTCGGC
AGCGAGCTAG GCAAGTTTGT TGAACAAAAA TATCGCCAAT TGCTCGCCAA TGACCTAAAG
CCTAACGGCC AAATTGGTCG CACCATGGCT GGAGGGTATC GCTAA
 
Protein sequence
MANKSLGTLT LNMVAETGSF VEGQTKAERA LAKTEAAAAK QKAELNRLLG QIDPLVAEYS 
KLDKMEQQLR RHRESGSLQQ AEYDTYSKKI AQMRTEVGKA GVEYDKTGMS AKQMAFATRG
LPAQFTDIAV SLQAGQNPMT VFLQQGGQLK DMFGGVGPAA KAMGGYIMGL INPFTVAASA
AGVMALAYYQ GSIEADRLRN ALILTGNSAG TTTDQLMEAA KRIDAISGTQ RQASAALAEV
ANTGKFTASQ IELVGLAAVK MENTTGKAVA DTVAEFVKLA DDPVKAAEEL NKKFNFLSAS
TYEQIVALKE AGKSTAAAEL AFSAYSNAID QRTKEITGNL GSIEKAWKAI KSGAVESWDQ
ILNIGRADTL EQQYAALSKR IEDLRPKTKQ GEWGYGLARE ELKALEAERD SVMALMKTER
DRSAEQAKRA KLNQDSIEAQ RAIAKVTEET LTNEQKRNKA IKEYNDNIEK VRKADPNSAL
LNADKIKRDL ASIEEKFKDS AKTTKAFADD AATSYLMRLR ETQAGLQGQL DRNTKLTQSQ
KELLQFEQQI ADIKNKDVLT AQQKSLLAEQ SVIRAQLEKN VALDEELKKR NEALRLQSYS
ANLAANLAAE QQRNADKLAS FGLGDKAQQR LGDRQSIERD IERAQGKALS DNLAGRTTDE
EYQAQLVMLK QNLSDRLAAQ NEYYIALDAK QADWTNGARS SMQNYIDAAA DMAGQTEKLF
DSAFGGMTDA LTDFVTTGKA DFAWLTKSIL ADIAKIAMQK AIAGIASSIF GGFSEGGAVG
YSSGGYTGAG GKYEPAGIVH RGEVVWSQRD VARAGGVATV EAMRKGHKGY DNGGIVGGAA
YNGVPASATA GAGVVHVEVN IDQSGNATTT ADTPALSQFG SELGKFVEQK YRQLLANDLK
PNGQIGRTMA GGYR