| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2896 |
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| Symbol | ligA |
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| ID | 1170586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3017751 |
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| End bp | 3019820 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637344712 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | NP_718468 |
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| Protein GI | 24374425 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGACA TTCAACTCGA TAAACGCCTT TCTGAACTGC TTTCTCAAGC TGTTACACCA
CAAACCGCGC AGCCATTGAT GCAGGCGCTC AGCCAATCTC TCAATGAACA CAATATTCGT
TACTATGTGG ATGATGCGCC AAGCATTACC GATTCCGAAT ACGACAGATT AATGCAACAG
CTTAAAAAGC TCGAGGCAGA GTATCCTCAG TTTGTCTTAG CCGATTCGCC AACCCAAAGA
GTGGGCGGCC TGGCACTGGC CAAGTTTGAG CAGATTACTC ATCTTAAACC CATGTTAAGC
CTCGATAATG CCTTTGATGA AGCGGACTTT ACAGCGTTTC ATAAGCGAGT GAGTGATAGA
GTGGGTCAAG TGAGCTTTTG CTGTGAGCCT AAACTCGATG GTCTCGCGGT GAGTATTTTA
TATCGCAACG GTGTGCTTGA GCGCGCCGCT ACCCGTGGCG ATGGCACTGT GGGCGAGGAT
ATTACCGAAA ACGTCAAAAC CATTAAATCA ATTCCACTTA GGTTGCGTGG CAACAATTAT
CCCGAATTGG TTGAAGTGCG CGGCGAAGCC TTTATGCCCA AGGCGGCGTT TGAGGCACTA
AATGAGCGTG CACGTTTAAA GGATGACAAA CAGTTTGTGA ATCCACGTAA CGCGGCGGCG
GGTAGTTTAC GCCAGCTCGA TAGCAAAATT ACCGCCTCGC GAGCGCTGTC GTTTTATGCC
TATGCATTAG GTGTAGTTGA ACCAAGCTCC CATGAATTAG CCAAGACCCA TTATGAGCAA
TTACAGCAAC TTAAATCTTG GGGGCTGCCC GTCAGCAGCG AGATTAAAGT TTGTGATGAA
CTTAACCAAG TCTTTGCTTA TTATAAAGAT ATTTTGACAA GACGCAGTGA TTTACCCTTT
GAAATTGACG GCGTGGTGAT GAAGGTTAAC GATATTGCCC AGCAGCAAAC CTTAGGTTTT
GTAGCAAAGT CTCCCCGCTG GGCGATTGCC TATAAGTTTC CTGCACAGGA AGAAATGACT
CTGCTCGAAG GTGTGGATTT TCAAGTGGGC CGCACCGGCG CCGTTACGCC TGTGGCGCGC
TTAAAACCTG TGTTCGTCGG TGGGGTAACT GTGTCTAATG CCACCTTGCA CAATGCCGAT
GAAATCGAGC GTTTAGGCGT AATGGTCGGC GATACTGTGA TTATTCGCCG CGCCGGTGAT
GTGATCCCGC AAATTGTGGC CATTGTACCC GAGCGCCGCT CTGAGGATGC GCAGGCGATT
GTGTTTCCAC AACATTGCCC TGTGTGTGGC AGCTTGGTCG AGCGTTTAGA GGGGGAAGCG
GTAGCCCGTT GCAGTGGCGG CTTATTCTGC GAGGCGCAGC GCAAAGAAGC GATTAAACAT
TTTGCTTCCC GCAAGGCATT AGATATCGAT GGTATGGGCG ACAAAATTGT TGAGCAGCTC
ATTGATAAAG AGCTGGTTCA AAGCCCCGCA GATCTGTTTA AACTCACCGC CTCTATGATG
ACCATGCTCG ACCGTATGGG AATGAAGTCC GCCACCAATT TAGCGCTCGC CATTGAAGCG
GCTAAAACCA CCACCTTGCC ACGTTTCTTG TATGCTTTAG GCATTCGTGA GGTGGGTGAG
GCCACTGCGG CAAACCTTGC GGCACACTTT GGTAGCCTAG ATGCACTGCG CATCGCCACT
ATTGAACAAT TAATCGAGGT TGAAGATATC GGCGAAGTGG TTGCCCAGCA TGTAGCACAT
TTTTTTGCCC AGCCCCATAA CCTTGAGGTA ATCGATGCCT TAATTGCGGC GGGGGTAAAC
TGGCCTGCGA TTGAAGCGCC AAGCGCCGAC GAGCAACCAT TAAAAGGACA AACGTGGGTG
TTAACGGGTA CCTTAAATCA ACTCAACCGT AACGATGCTA AGGCGCAATT ACAAGTCTTA
GGCGCAAAAG TCGCGGGCAG TGTGTCGAAA AACACCGACT GCTTAGTGGC GGGTGAAGCG
GCCGGATCTA AGCTGGCAAA AGCGCAGGAG CTAGGCGTGA AGGTGATTGG CGAAGACGAG
CTACTCGCTT TACTTGCGGC TAATCGTTAA
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| Protein sequence | MQDIQLDKRL SELLSQAVTP QTAQPLMQAL SQSLNEHNIR YYVDDAPSIT DSEYDRLMQQ
LKKLEAEYPQ FVLADSPTQR VGGLALAKFE QITHLKPMLS LDNAFDEADF TAFHKRVSDR
VGQVSFCCEP KLDGLAVSIL YRNGVLERAA TRGDGTVGED ITENVKTIKS IPLRLRGNNY
PELVEVRGEA FMPKAAFEAL NERARLKDDK QFVNPRNAAA GSLRQLDSKI TASRALSFYA
YALGVVEPSS HELAKTHYEQ LQQLKSWGLP VSSEIKVCDE LNQVFAYYKD ILTRRSDLPF
EIDGVVMKVN DIAQQQTLGF VAKSPRWAIA YKFPAQEEMT LLEGVDFQVG RTGAVTPVAR
LKPVFVGGVT VSNATLHNAD EIERLGVMVG DTVIIRRAGD VIPQIVAIVP ERRSEDAQAI
VFPQHCPVCG SLVERLEGEA VARCSGGLFC EAQRKEAIKH FASRKALDID GMGDKIVEQL
IDKELVQSPA DLFKLTASMM TMLDRMGMKS ATNLALAIEA AKTTTLPRFL YALGIREVGE
ATAANLAAHF GSLDALRIAT IEQLIEVEDI GEVVAQHVAH FFAQPHNLEV IDALIAAGVN
WPAIEAPSAD EQPLKGQTWV LTGTLNQLNR NDAKAQLQVL GAKVAGSVSK NTDCLVAGEA
AGSKLAKAQE LGVKVIGEDE LLALLAANR
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