Gene SO_2785 details

Gene Information

• Locus tag: SO_2785
• Symbol: rne
• ID: 1170485
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 2906071
• End bp: 2909337
• Gene Length: 3267 bp
• Protein Length: 1088 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637344612
• Product: ribonuclease E
• Protein accession: NP_718364
• Protein GI: 24374321
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1530] Ribonucleases G and E
• TIGRFAM ID: [TIGR00757] ribonuclease, Rne/Rng family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACGTA TGTTAATCAA TGCAACTCAA TCAGAAGAGT TGCGTGTTGC CCTCGTTGAC 
GGGCAACAAC TGTACGACCT CGATATTGAA AGTCCTGGTC ATGAGCAAAA AAAATCTAAT 
ATTTACAAGG GTAAGATCAC CCGCGTAGAA CCCTCTTTAG AAGCCGCTTT CGTTGACTAT 
GGTGCTGAGC GCCACGGCTT TTTACCACTT AAAGAAATCG CCAGAGAATA TTTCCCTAAA 
GGCTATTCTT TCCAAGGTCG CCCGAACATC AAAGAAGTGG TCAGTGAAGG ACAAGAAGTC 
ATTGTTCAAA TTGACAAAGA AGAACGCGGC AACAAAGGTG CGGCGCTGAC CACCTTTATC 
AGCCTTGCTG GCTCTTATTT AGTGTTAATG CCGAACAACC CTCGTGCAGG CGGCATTTCT 
CGCCGTATCG AAGGGGATGA GCGCACTGAA TTAAAAGAAG CCATGGCCGA TTTAGAAGTC 
CCTGCTGGAA TGGGCCTTAT CGTCCGTACT GCTGGTGTGG GTAAAGAATC GACCGAACTA 
AAGTGGGACT TAAAAGTTCT ACAACACCAT TGGGCTGCCA TCACTGAAGC AGCGCAAACC 
AAAGGTGCGC CTTTCCTCAT TCACCAAGAA AGTAATGTCA TTGTTCGCGC AATTCGTGAC 
TATTTACGCC GAGATGTGGG TGAAATTTTA ATCGACCATC CACGTATTTA CGAAGAAGCC 
AAACAACACA TTGCCCTTGT GCGCCCAGAC TTTGTTGAGC GAGTAAAGCT CTACGAAGCT 
GAAGTACCAT TGTTTACGCA CTACCAAATC GAGTCACAAA TTGAATCAGC CTTCCAACGT 
GAAGTGCGCT TGCCATCAGG CGGTTCAATT GTTATCGACC CGACAGAAGC CTTAACCTCT 
ATCGATATCA ACTCTGCCCG AGCCACGAAA GGCGGTGATA TTGAAGAAAC TGCATTAAAT 
ACTAACCTTG AAGCCGCCGA TGAAATTGCC CGTCAATTAC GTCTACGTGA CTTAGGTGGT 
TTAGTGGTTA TCGACTTTAT TGATATGACA CCAGTTCGTC ATCAACGTGA AGTCGAAAAT 
CGTTTACGCG ATGCCGTGCA CCACGACCGT GCCCGTGTAC AATTAGGCCG TATTTCACGC 
TTTGGTTTAA TGGAAATGTC ACGCCAGCGT TTACGTCCGT CATTGGAAGA GTCCGCAGCC 
CATATCTGCC CTCGTTGCCA TGGCCAAGGC ACAATCCGTA GTACTGAATC TTTAGCGCTG 
TCTATTCTGC GTTTGATGGA AGAAGAAGCC ATCAAAGAAA ACACCTCACA AATCGAAGCC 
ATTGTACCTG TCGATGTGGC TGCATTCCTG CTTAACGAGA AACGTAAAGC GATTCGTATT 
ACTGAACAGC GCCACGATGT GGAAGTCTAT GTGATCCCAG ATCCACATAT GATGACCCCT 
GATTATCGCG TGATCCGTCA CCGCACCGAT GATGAAATCG ACGAATCCAG CTACAAGCGT 
ATTGAGCAGC CAGAAGCCAA ATTGTATGAA CCACGTAAAC TGGAACGCAC TGCGGCACCT 
GCACCTGCGC TAAAAGGGTT TACTGCACCA CAGAAAGTGG AACAAGATGT TGCGCCTGTA 
GCCAAAGTAG AAGCCGCAAA GCCAGGTTTA TTTAGTAAAC TCTTCAGTGC AATTGGTTCC 
TTCTTTAGCT CAAGCGATAA CGCTGCAACA GAAAAAAGCG CCGAAACCAA AAAGTCTGAC 
AGCCAGGCCA CCAATGCGAA CCGTCGTAAC CGTCGTAATG ACACTCGCCG TACTCGCAAT 
AACCAAGACA CTGAAAAAGC CAAAGAAGGC TCACGCGAGC CACGTGCGCG CAATGCCAAG 
AAAGTGGCCG ATGCCCCACA AGCGCAAGAG CGCCCAATCC GTGAAAAGGA TGAAAGTGCG 
AAGCGCGCTA AGCCTGAGGC TAAGAACCGT AGTCAAGCAC CAAAAGAAGT GATTGCAGAT 
GTTCAAGACG AAGCGCCAAA GCAAGAAGTC GTCCGTGAAC GTCGTCAGCG CCGCAATATG 
CGCCGCAAAG TTCGTATGGA CAACACCACT GATGTTGTTG AAACGTCAAT TCAGGAAGAA 
GCAATATTAG CTGAAATCGT TGCAATCAAT GCAGATGCTG CTGTAGAGGC TCAACCGGAA 
GCTAAAGCAC CGCGTTCACG TCGTCAGCCA CGTAAAGAGG TCGCGGTTGC CAATGAGACT 
ACAGACACTC CAGCAACAGA TGCTGCTGAT GAAGCGAAGC CAATTGATGC CATCGCTGAT 
GCTCCTATCG TTGAAAGCCA AGCTGACATA CAAGTTGATC CCAAGTCAGA GGCTCAATTA 
GCAACCACTG ACGAAGACAA CACCGACGTG GATGACAAAA CCAAACGCGA ATCCCGTGAT 
GGACAACGTC GTAGTCGTAG AAGCCCTCGT CATCTGAGAG CTGCTGGCCA ACGTCGCCGC 
CGTGATGAAG ATGAGCAAAG CACCGCGGCT CCAGCGCAGT TCATTCCAAA TGATGCGTTA 
GGGGAAGACC AAGACTACCC TGCACCAATG GCAATAGTTG AAACGGTTAA CTTCGCAGAT 
CAAGCTGTGG CTGAAACAGT CGCAGTGGAA GTTGAGGTGA AAAGTGTAGC AACGCAGCCA 
ACAACTGTTG CACACACGGC CGATGTCACT ACATCCTATG AAGCAACTTT CTCTGAAAGT 
AAAGCGATAG ATGACGCTAC GTCAGCAGTT GCAGTTGAAC AACTCACGGA TATTAAAGCG 
GATGTTGTCG ATACTGAAAT CGCATCTGAA CCTGTAGTCA ATGATAATGC TACACAAACG 
GTTAAGGTAT CTAACGTTAT AGCTGAGTCA TCTGTGGTAA TAGAACCCAC AGTGCAAACC 
ACAGTAGTAG CGCAAACGGA CGTTAGAACC TTTGATGCAA AAGCTGAAGA AGTGACACAA 
GCGACTGAAA AAGCTGAACT GAAAGAAGTG GTAAAATCTG TCGCATCAGC ACCGATGGCA 
AAACCCGCAG CTATCGTCAA ACCTCAGGTT AAACCTGTGG TTGCTCAAGC TTCAGCGGTT 
CAACCATCGG AAGCTGTTGT GAGCAAACCC AAAGCCGCTA GTCGTTTTGG TGCTATGGTG 
TCATCTGAAA TGACCAAACC AACAGTAGAA GTCAGAGCAC AGGTAGAAGT GCCTAAAGGC 
CGTGAGTACG AGAATACCCC TGCCTCTGAA GCAGCGACTA AGCTTAAACA CAGTAATAGT 
GCAGAATCGG ATATGGCTCG ACCATAA 

 

Protein sequence

MKRMLINATQ SEELRVALVD GQQLYDLDIE SPGHEQKKSN IYKGKITRVE PSLEAAFVDY 
GAERHGFLPL KEIAREYFPK GYSFQGRPNI KEVVSEGQEV IVQIDKEERG NKGAALTTFI 
SLAGSYLVLM PNNPRAGGIS RRIEGDERTE LKEAMADLEV PAGMGLIVRT AGVGKESTEL 
KWDLKVLQHH WAAITEAAQT KGAPFLIHQE SNVIVRAIRD YLRRDVGEIL IDHPRIYEEA 
KQHIALVRPD FVERVKLYEA EVPLFTHYQI ESQIESAFQR EVRLPSGGSI VIDPTEALTS 
IDINSARATK GGDIEETALN TNLEAADEIA RQLRLRDLGG LVVIDFIDMT PVRHQREVEN 
RLRDAVHHDR ARVQLGRISR FGLMEMSRQR LRPSLEESAA HICPRCHGQG TIRSTESLAL 
SILRLMEEEA IKENTSQIEA IVPVDVAAFL LNEKRKAIRI TEQRHDVEVY VIPDPHMMTP 
DYRVIRHRTD DEIDESSYKR IEQPEAKLYE PRKLERTAAP APALKGFTAP QKVEQDVAPV 
AKVEAAKPGL FSKLFSAIGS FFSSSDNAAT EKSAETKKSD SQATNANRRN RRNDTRRTRN 
NQDTEKAKEG SREPRARNAK KVADAPQAQE RPIREKDESA KRAKPEAKNR SQAPKEVIAD 
VQDEAPKQEV VRERRQRRNM RRKVRMDNTT DVVETSIQEE AILAEIVAIN ADAAVEAQPE 
AKAPRSRRQP RKEVAVANET TDTPATDAAD EAKPIDAIAD APIVESQADI QVDPKSEAQL 
ATTDEDNTDV DDKTKRESRD GQRRSRRSPR HLRAAGQRRR RDEDEQSTAA PAQFIPNDAL 
GEDQDYPAPM AIVETVNFAD QAVAETVAVE VEVKSVATQP TTVAHTADVT TSYEATFSES 
KAIDDATSAV AVEQLTDIKA DVVDTEIASE PVVNDNATQT VKVSNVIAES SVVIEPTVQT 
TVVAQTDVRT FDAKAEEVTQ ATEKAELKEV VKSVASAPMA KPAAIVKPQV KPVVAQASAV 
QPSEAVVSKP KAASRFGAMV SSEMTKPTVE VRAQVEVPKG REYENTPASE AATKLKHSNS 
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