| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2758 |
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| Symbol | |
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| ID | 1170459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 2880233 |
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| End bp | 2881636 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637344589 |
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| Product | GGDEF family protein |
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| Protein accession | NP_718340 |
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| Protein GI | 24374297 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCTCAA AACTCAGTTG GCCTTGTGTT CGTCAATCCT GTTTATTGGC AACCTTGGTA
TTTATTGTAC TGCTACTCAC CCTTTTGCCC TTAAAAATTG ATAAGGAACA TAGGGCATTT
ACAAACTTTG TACGGGCAAA ACATGTGGTG CCAAGCTATG TTGAATTGCT GGGTAAGTCA
TTGTATCTAC ATGATATTAT TGATTTTGAT AGTACCCTAC TGGCCCCCGT TAAGCTTGAC
CCATCACGCT TATTACTGCC ACCCGGAGGC ACCTTGCTGC CGGAAGAAGA GCAGATTATT
CGTTATTTTG ACTACCTGTA TTCGAGCAAG AAAATCGCAG TTAGGGACGC GTTTATTTAT
ATTGGCCTTT ACAAAAGCAA TGCATTCTAT GTTGCAACAC CTCTTCCTGA AGAGGTGAAA
AGCCGTTTAA TGAATAAGCA AAATTCCGCA AATGAGTTTT GTCAGCGCCT AAAATATTGC
AGCAAGGATG CTTCGGCTGA ATCCTTAGCG GATGATATTG TGTTATCTAC GCCTTATCTT
GATGAAATAA CTGGGGATAT TATTTTATCT ATGGCAGCAC CCATTTCATC CTCCCATGAG
CCTGAACACC TTTTAGGGGA TGTTATTGCC GATACATCAT TCATGGCATC GGATTTTATG
CAAGGAAAAG TATTTGAAAT CCAACACTCG GGTTATGGCA CTGAAATTGT GATTACGGGA
GATAGTCTCT GGACGCGGAT CACGCCGGAT TTTTTGTTTT ACGCTATGAG TGATCATTTA
GATAATCTGA GTTTTTTAAC CTATAAAATC AGTGTGCTAC GTTTTGTTAT GTTGTATTTT
CCCCTATGGT TGTTACTCAG TACAGTTATC ATGATTTATC AAATCAAACT TAATAATATT
AAACAGTTGC GAGTTGATCG TCAGCGTTTT AGAGAGGCTA TGCTGTTAGA CCCTTCAACC
AAAATCTACA ATAAAAAAGT CTATGAAACG CTGATTTTTA AGGCTGTCAT TGCTTCGCAG
TATGCGGTGA TTTGTATTGA TGGCGATAAG ATCAAAACCA TTAACGATAG TTATGGCCAT
AAACTGGGTG ACATGGCGAT TATGCAAATT GTAGAAGCCA TGCGAGCCGT TTTTCGAGAA
AGCGACATAC TTATCCGCAC AGGAGGTGAT GAGTTTGTAG TGATTTTAGC CAACTGTCCT
GTTGCTAAAG CGTTACAACT TGCTGATAAA TTAAAGGATA ATATTGCACA ACGACATTTT
TTAAATATGC TGACTGTATC TTGCGGTGTC GCGGATTCGA CAGACTACTC ATCCTTTGAT
GCGGTATTAC AGGCTGCAGA CAAAGCGCTC TATGCGGATA AGGCACAAAA AAGAGGTCAT
GCTGGCGATG ATGTCCTGCG GTAA
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| Protein sequence | MGSKLSWPCV RQSCLLATLV FIVLLLTLLP LKIDKEHRAF TNFVRAKHVV PSYVELLGKS
LYLHDIIDFD STLLAPVKLD PSRLLLPPGG TLLPEEEQII RYFDYLYSSK KIAVRDAFIY
IGLYKSNAFY VATPLPEEVK SRLMNKQNSA NEFCQRLKYC SKDASAESLA DDIVLSTPYL
DEITGDIILS MAAPISSSHE PEHLLGDVIA DTSFMASDFM QGKVFEIQHS GYGTEIVITG
DSLWTRITPD FLFYAMSDHL DNLSFLTYKI SVLRFVMLYF PLWLLLSTVI MIYQIKLNNI
KQLRVDRQRF REAMLLDPST KIYNKKVYET LIFKAVIASQ YAVICIDGDK IKTINDSYGH
KLGDMAIMQI VEAMRAVFRE SDILIRTGGD EFVVILANCP VAKALQLADK LKDNIAQRHF
LNMLTVSCGV ADSTDYSSFD AVLQAADKAL YADKAQKRGH AGDDVLR
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