| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2748 |
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| Symbol | tolB |
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| ID | 1170448 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 2869191 |
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| End bp | 2870519 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637344580 |
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| Product | translocation protein TolB |
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| Protein accession | NP_718332 |
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| Protein GI | 24374289 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATTT TGGCAAAATG GTTAACATTG GTGGTACTGC TTTGTACCAC CCCCGCAAAA
GCGGCACTGG ATATTGTGAT CACTGAAGGT GTGGATGCGG CCCGTCCTAT CGCTGTGATG
CCATTCCAAT GGCAAGGCGC AGGTGCGCCA CCGCAGGCAA TCGCCGATGT GGTCATGTCT
GACTTAGTGC GCAGTGGTAC GTTTAAACCC TTAGATGAAT TAGGTTTACC GCAACGCGGT
ATTGGTGCAT TAGCGCAGTT TGATGCGAAT GCTTGGACTA ACGTGAGTGC AGAAGCGTTG
GTGGTTGGTT CAGTCAAACC TTATGGTGCG GATCAGTTTC TGGTGAGCTT TGAGCTTATC
GATCTGGTTA AAGCGCAAAA CCAAGCCCTA AAGGGCTCCG CAAATCCAAC GGAATTGTTG
ATGGATAGTC GCCAGACCGT GATTTCTGCG ACGCAGTTTC GTCAATATGG CCATAGGATC
AGTGATATTG TCTATGAAAA GCTGACGGGT ATTCGTGGTG CCTTCTTGAC CCGTATTTCC
TACGTGGTGG TGAATCATAG CCAGAAAGCG GCTTATTCAC TGATGATCGC TGACTATGAC
GGTTACAACG AGCAAATGTT ACTGCGCTCT CCAGAGCCTT TAATGTCACC CGCTTGGTCA
CCCGATGGTC GCCGTTTAGC GTATGTGAGT TTTGAAAACA AAAAGGCTGA AATTTTTGTT
CAGGATCTTT ACACCCAAGT CCGTACTAAG GTGAGTAGTT TCTCTGGCAT TAACGGTGCG
CCTTCTTTTT CACCTGACGG TAAATCATTG GCCGTGACTC TCTCTAAGGA TGGTCAACCC
GAAATTTACG TCATTGATAT TGCCACTAAG GCAATTAAAC GAATTACCAA CCACTATTCC
ATCGATACTG AGCCTTCATG GTATCCCGAT GGTAAGTCAT TGTTGTTTAC CTCCGAGCGT
GGTGGTAGAC CACAGTTATA TCGTGTAGAT TTAAATTCAG GCAAAGTGAC CCGTGAAACC
TTTGAAGGTG AATGGAATTT AGGTGGTTCT ATTACCCCTG ATGGTCGCAG CATGATTTTT
GTGAATCGCA CAAATGGTAA ATTTAATATT GCACGTATGG ATTTAAGTAC GCGCTTTATG
CAGGTGCTGA CATCGACGCG TTTGGATGAA TCTCCAAGTG TGGCCCCCAA TGGTACTATG
GTGATTTATG GCACTACGCA TCAAGGCAAA CAAGTTTTAG CTGCTGTCTC TACGGACGGA
CGCTTTAAAG CGAGATTACC GGCAGGTCAG GGCGAGGTGA AATCACCTTC TTGGTCTCCG
TTTCTCTAA
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| Protein sequence | MKILAKWLTL VVLLCTTPAK AALDIVITEG VDAARPIAVM PFQWQGAGAP PQAIADVVMS
DLVRSGTFKP LDELGLPQRG IGALAQFDAN AWTNVSAEAL VVGSVKPYGA DQFLVSFELI
DLVKAQNQAL KGSANPTELL MDSRQTVISA TQFRQYGHRI SDIVYEKLTG IRGAFLTRIS
YVVVNHSQKA AYSLMIADYD GYNEQMLLRS PEPLMSPAWS PDGRRLAYVS FENKKAEIFV
QDLYTQVRTK VSSFSGINGA PSFSPDGKSL AVTLSKDGQP EIYVIDIATK AIKRITNHYS
IDTEPSWYPD GKSLLFTSER GGRPQLYRVD LNSGKVTRET FEGEWNLGGS ITPDGRSMIF
VNRTNGKFNI ARMDLSTRFM QVLTSTRLDE SPSVAPNGTM VIYGTTHQGK QVLAAVSTDG
RFKARLPAGQ GEVKSPSWSP FL
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