Gene SO_2629 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2629 
Symbolicd 
ID1170331 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp2764523 
End bp2766748 
Gene Length2226 bp 
Protein Length741 aa 
Translation table11 
GC content47% 
IMG OID637344456 
Productisocitrate dehydrogenase, NADP-dependent 
Protein accessionNP_718214 
Protein GI24374171 
COG category[C] Energy production and conversion 
COG ID[COG2838] Monomeric isocitrate dehydrogenase 
TIGRFAM ID[TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGATA ACTCACCAAC AATTATTTAT ACCGAAACCG ATGAAGCGCC AGCACTGGCA 
ACGCTTTCTC TGTTACCTAT CATCAAAACC TTTACCAATG CGGCGGATGT GGCGGTTGAA
ACCCGTGACA TTTCTTTATC TGGCCGTGTG ATTGCTAACT TCCCTGAAAA ACTAACTGAC
GCGCAAAAGA TTGGCGATCA TTTAGCTGAG CTTGGCGATC TGGCTAATCA ACCTGAAGCC
AATATCATCA AGCTGCCTAA TATCAGTGCG TCAATCCCCC AGTTAAAAGC CTGTATTTTA
GAGCTGCAAC AGAAGGGTTA TGACATTCCA AACTATCCTG ATGAGCCAAA AACTGACGAA
GAAAAGTCAA TTAAAGCGCG TTATGACAAG ATCAAAGGCA GTGCGGTAAA CCCAGTACTG
CGTGAAGGTA ACTCTGATCG CCGCGCGCCG CTATCAGTGA AAAACTTCGC GAAAAAGAAC
CCACACTCTA TGGGTAAATG GGTGAAAGAC TCTAAGTCAC ACGTTGCTCA TATGAGCGAA
GGTGATTTTT ACGGTAGCGA GCTTTCTGTG ACGCTCTCTA ATGCTGACAC TGTCAACATT
GTGCTGGCAC AAAAAGACGG TCAAGAAGTC GTCCTTAAAT CAGGCCTGAA ACTGCTAGCG
GGTGAAATCA TCGACGCGTC AGTGATGAGC AAAAAAGCCT TAGTCAGCTT CTTTGAGCGT
GAAATCGCCA ATGCCAAGGC TGAAAATGTG CTGTTATCGC TGCACCTTAA AGCCACCATG
ATGAAAGTGT CTGATCCCAT CATGTTCGGT CATGCAGTGA AAGTGTTCTT CAAACCTGTG
TTTGATAAAC ATGCGGCATT ATTTGCTGAG TTAGGCGTTG ATGTTAACAA CGGTTTTGGC
GACGTATATG CGAAAATCGC CAGCTTACCT ACCGATGTAC GCAGCCAAAT TGAAGCCGAT
ATCGCGGCGG TCTACGCTGA GGGTCCTGCG CTGGCGATGG TGGATTCTGA CAAAGGCATC
ACCAACTTAC ACGTTCCAAG CGACATTATT ATCGATGCTT CTATGCCAGC GGCTATTCGT
TCATCTGGCC AAATGTGGGG CCCTGATGGC AAGTTGCACG ATACTAAAGC CCTGATCCCT
GACCGTTGCT ACGCCGGTGT GTATCAAGAA ACTATCGCGT TCTGTAAAGA GCACGGTGCC
TTTGATCCAA GCACTATGGG CAGTGTGCCA AACGTGGGTT TAATGGCACA AAAAGCCGAA
GAATACGGTA GCCACGATAA AACCTTCGAA ATCCCTGCCG ATGGCGTAGT TAACGTGATT
GATGCCAGTG GCAAAGTATT AATGAGTCAC AATGTGGAAG CGGGCGACAT TTGGAGAATG
TGCCAAGTTA AAGACGCGCC TATCCGTGAC TGGGTCAAAC TTGCCGTTCG CCGCGCACGT
TTAAGCAATA CACCAGCGGT ATTCTGGTTA GATGCAAATC GTGCCCACGA TGCGCAATTG
ATTGTTAAAG TGAAGCAATA TCTACCTGAA CATGACACCA GCGGTTTAGA CATCAGCATT
ATGTCGCCAG AAGAAGCAAC ACGTTTCTCT TTAGCGCGCA TCAAAGAAGG TAAAGACACC
ATTTCAGTTA CTGGTAACGT ACTGCGTGAC TATTTGACTG ACTTGTTCCC AATCCTTGAG
CTGGGTACCA GTGCCAAAAT GTTATCTATC GTGCCATTAA TGAATGGTGG CGGTCTGTTC
GAAACGGGTG CGGGTGGCAG TGCGCCTAAA CACGTACAAC AGGTTGAAAA AGAAGGTCAC
TTACGTTGGG ATTCACTCGG TGAATTCTTG GCATTAGCCG CCTCTTTGGA GCATTTAAGC
CAAACAGTGG GTAACCCTAA AGCGCAAGTA CTGGCGGATA CCTTAGATCA AGCCATTGGT
CAGTTCTTAG ATAGCAACAA GTCACCATCA AGAAGAGTCG GTGAATTGGA TAACCGTGGT
AGCCATTTCT ATCTGGCCAT GTATTGGGCA CAGGCATTAG CTGTTCAAAC AAAAGACGAG
CAGCTACAAG CTCACTTTAT CCCATTAGCC CACGCTTTAA GCGCAAATGA GCAAGTGATT
GTGGCTGAGC TAAACAATGC GCAAGGTGCA CCAGTGGATT TAGGTGGTTA CTATCGTTTA
GATGCTGTTA AGGCTGAAAA AGCCATGCGC CCAAGCGAAA CGCTAAACAA GCTATTGATT
GCTTAA
 
Protein sequence
MKDNSPTIIY TETDEAPALA TLSLLPIIKT FTNAADVAVE TRDISLSGRV IANFPEKLTD 
AQKIGDHLAE LGDLANQPEA NIIKLPNISA SIPQLKACIL ELQQKGYDIP NYPDEPKTDE
EKSIKARYDK IKGSAVNPVL REGNSDRRAP LSVKNFAKKN PHSMGKWVKD SKSHVAHMSE
GDFYGSELSV TLSNADTVNI VLAQKDGQEV VLKSGLKLLA GEIIDASVMS KKALVSFFER
EIANAKAENV LLSLHLKATM MKVSDPIMFG HAVKVFFKPV FDKHAALFAE LGVDVNNGFG
DVYAKIASLP TDVRSQIEAD IAAVYAEGPA LAMVDSDKGI TNLHVPSDII IDASMPAAIR
SSGQMWGPDG KLHDTKALIP DRCYAGVYQE TIAFCKEHGA FDPSTMGSVP NVGLMAQKAE
EYGSHDKTFE IPADGVVNVI DASGKVLMSH NVEAGDIWRM CQVKDAPIRD WVKLAVRRAR
LSNTPAVFWL DANRAHDAQL IVKVKQYLPE HDTSGLDISI MSPEEATRFS LARIKEGKDT
ISVTGNVLRD YLTDLFPILE LGTSAKMLSI VPLMNGGGLF ETGAGGSAPK HVQQVEKEGH
LRWDSLGEFL ALAASLEHLS QTVGNPKAQV LADTLDQAIG QFLDSNKSPS RRVGELDNRG
SHFYLAMYWA QALAVQTKDE QLQAHFIPLA HALSANEQVI VAELNNAQGA PVDLGGYYRL
DAVKAEKAMR PSETLNKLLI A