Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_2629 |
Symbol | icd |
ID | 1170331 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 2764523 |
End bp | 2766748 |
Gene Length | 2226 bp |
Protein Length | 741 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637344456 |
Product | isocitrate dehydrogenase, NADP-dependent |
Protein accession | NP_718214 |
Protein GI | 24374171 |
COG category | [C] Energy production and conversion |
COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGATA ACTCACCAAC AATTATTTAT ACCGAAACCG ATGAAGCGCC AGCACTGGCA ACGCTTTCTC TGTTACCTAT CATCAAAACC TTTACCAATG CGGCGGATGT GGCGGTTGAA ACCCGTGACA TTTCTTTATC TGGCCGTGTG ATTGCTAACT TCCCTGAAAA ACTAACTGAC GCGCAAAAGA TTGGCGATCA TTTAGCTGAG CTTGGCGATC TGGCTAATCA ACCTGAAGCC AATATCATCA AGCTGCCTAA TATCAGTGCG TCAATCCCCC AGTTAAAAGC CTGTATTTTA GAGCTGCAAC AGAAGGGTTA TGACATTCCA AACTATCCTG ATGAGCCAAA AACTGACGAA GAAAAGTCAA TTAAAGCGCG TTATGACAAG ATCAAAGGCA GTGCGGTAAA CCCAGTACTG CGTGAAGGTA ACTCTGATCG CCGCGCGCCG CTATCAGTGA AAAACTTCGC GAAAAAGAAC CCACACTCTA TGGGTAAATG GGTGAAAGAC TCTAAGTCAC ACGTTGCTCA TATGAGCGAA GGTGATTTTT ACGGTAGCGA GCTTTCTGTG ACGCTCTCTA ATGCTGACAC TGTCAACATT GTGCTGGCAC AAAAAGACGG TCAAGAAGTC GTCCTTAAAT CAGGCCTGAA ACTGCTAGCG GGTGAAATCA TCGACGCGTC AGTGATGAGC AAAAAAGCCT TAGTCAGCTT CTTTGAGCGT GAAATCGCCA ATGCCAAGGC TGAAAATGTG CTGTTATCGC TGCACCTTAA AGCCACCATG ATGAAAGTGT CTGATCCCAT CATGTTCGGT CATGCAGTGA AAGTGTTCTT CAAACCTGTG TTTGATAAAC ATGCGGCATT ATTTGCTGAG TTAGGCGTTG ATGTTAACAA CGGTTTTGGC GACGTATATG CGAAAATCGC CAGCTTACCT ACCGATGTAC GCAGCCAAAT TGAAGCCGAT ATCGCGGCGG TCTACGCTGA GGGTCCTGCG CTGGCGATGG TGGATTCTGA CAAAGGCATC ACCAACTTAC ACGTTCCAAG CGACATTATT ATCGATGCTT CTATGCCAGC GGCTATTCGT TCATCTGGCC AAATGTGGGG CCCTGATGGC AAGTTGCACG ATACTAAAGC CCTGATCCCT GACCGTTGCT ACGCCGGTGT GTATCAAGAA ACTATCGCGT TCTGTAAAGA GCACGGTGCC TTTGATCCAA GCACTATGGG CAGTGTGCCA AACGTGGGTT TAATGGCACA AAAAGCCGAA GAATACGGTA GCCACGATAA AACCTTCGAA ATCCCTGCCG ATGGCGTAGT TAACGTGATT GATGCCAGTG GCAAAGTATT AATGAGTCAC AATGTGGAAG CGGGCGACAT TTGGAGAATG TGCCAAGTTA AAGACGCGCC TATCCGTGAC TGGGTCAAAC TTGCCGTTCG CCGCGCACGT TTAAGCAATA CACCAGCGGT ATTCTGGTTA GATGCAAATC GTGCCCACGA TGCGCAATTG ATTGTTAAAG TGAAGCAATA TCTACCTGAA CATGACACCA GCGGTTTAGA CATCAGCATT ATGTCGCCAG AAGAAGCAAC ACGTTTCTCT TTAGCGCGCA TCAAAGAAGG TAAAGACACC ATTTCAGTTA CTGGTAACGT ACTGCGTGAC TATTTGACTG ACTTGTTCCC AATCCTTGAG CTGGGTACCA GTGCCAAAAT GTTATCTATC GTGCCATTAA TGAATGGTGG CGGTCTGTTC GAAACGGGTG CGGGTGGCAG TGCGCCTAAA CACGTACAAC AGGTTGAAAA AGAAGGTCAC TTACGTTGGG ATTCACTCGG TGAATTCTTG GCATTAGCCG CCTCTTTGGA GCATTTAAGC CAAACAGTGG GTAACCCTAA AGCGCAAGTA CTGGCGGATA CCTTAGATCA AGCCATTGGT CAGTTCTTAG ATAGCAACAA GTCACCATCA AGAAGAGTCG GTGAATTGGA TAACCGTGGT AGCCATTTCT ATCTGGCCAT GTATTGGGCA CAGGCATTAG CTGTTCAAAC AAAAGACGAG CAGCTACAAG CTCACTTTAT CCCATTAGCC CACGCTTTAA GCGCAAATGA GCAAGTGATT GTGGCTGAGC TAAACAATGC GCAAGGTGCA CCAGTGGATT TAGGTGGTTA CTATCGTTTA GATGCTGTTA AGGCTGAAAA AGCCATGCGC CCAAGCGAAA CGCTAAACAA GCTATTGATT GCTTAA
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Protein sequence | MKDNSPTIIY TETDEAPALA TLSLLPIIKT FTNAADVAVE TRDISLSGRV IANFPEKLTD AQKIGDHLAE LGDLANQPEA NIIKLPNISA SIPQLKACIL ELQQKGYDIP NYPDEPKTDE EKSIKARYDK IKGSAVNPVL REGNSDRRAP LSVKNFAKKN PHSMGKWVKD SKSHVAHMSE GDFYGSELSV TLSNADTVNI VLAQKDGQEV VLKSGLKLLA GEIIDASVMS KKALVSFFER EIANAKAENV LLSLHLKATM MKVSDPIMFG HAVKVFFKPV FDKHAALFAE LGVDVNNGFG DVYAKIASLP TDVRSQIEAD IAAVYAEGPA LAMVDSDKGI TNLHVPSDII IDASMPAAIR SSGQMWGPDG KLHDTKALIP DRCYAGVYQE TIAFCKEHGA FDPSTMGSVP NVGLMAQKAE EYGSHDKTFE IPADGVVNVI DASGKVLMSH NVEAGDIWRM CQVKDAPIRD WVKLAVRRAR LSNTPAVFWL DANRAHDAQL IVKVKQYLPE HDTSGLDISI MSPEEATRFS LARIKEGKDT ISVTGNVLRD YLTDLFPILE LGTSAKMLSI VPLMNGGGLF ETGAGGSAPK HVQQVEKEGH LRWDSLGEFL ALAASLEHLS QTVGNPKAQV LADTLDQAIG QFLDSNKSPS RRVGELDNRG SHFYLAMYWA QALAVQTKDE QLQAHFIPLA HALSANEQVI VAELNNAQGA PVDLGGYYRL DAVKAEKAMR PSETLNKLLI A
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