| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2628 |
|---|
| Symbol | cspD |
|---|
| ID | 1170330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 2764097 |
|---|
| End bp | 2764303 |
|---|
| Gene Length | 207 bp |
|---|
| Protein Length | 68 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637344455 |
|---|
| Product | stress response protein CspD |
|---|
| Protein accession | NP_718213 |
|---|
| Protein GI | 24374170 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1278] Cold shock proteins |
|---|
| TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGCG GAACTGTTAA ATGGTTCAAC AACGCCAAAG GATTCGGGTT TATTTGCCCT
GATCAAGGTG GCGAGGACGT TTTTGCACAC TATTCTACCA TTGAAATGGA AGGCTATAGA
ACTCTAAAAG CAGGCCAACC CGTTCAATTT GAAGTAGAAC AAGGTCCAAA AGGAATGCAC
GCTTCAGCCA TTTCACCAAC AAAATAA
|
|---|
| Protein sequence | MASGTVKWFN NAKGFGFICP DQGGEDVFAH YSTIEMEGYR TLKAGQPVQF EVEQGPKGMH
ASAISPTK
|
|---|
| |