Gene SO_2602 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2602 
Symbol 
ID1170304 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp2738348 
End bp2738989 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content46% 
IMG OID637344430 
Productputative solute/DNA competence effector 
Protein accessionNP_718188 
Protein GI24374145 
COG category[T] Signal transduction mechanisms 
COG ID[COG3109] Activator of osmoprotectant transporter ProP 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATCAA CAGATAAGTT GACCGACACC AACGCAATTT TGGCGTATTT GTATGAAACA 
TTTCCTTTGT GCTTTATTGC TGAAGGTGAA ACTAAGCCAT TAAAAATCGG ATTGTTTCAA 
GATTTGGCTG AAAGGTTGGC TGATGATTCT AAAGTCAGTA AAACGCAACT GCGAGTGGCG 
TTAAGACGCT ACACCAGCAG CTGGCGCTAC CTAAAATCGG TAAAGGCCGG TGCACAGCGT 
GTCGATCTTG ATGGTCAGCC TTGTGGTGAG TTAGAGCAAG AGCATATTGA TCATGCTCAA 
GCCATGTTGA AAGAAAGCCA AGAAAAAGCC AAAGCTAAGC GTGCTGCTCA AACACCGAAA 
GCGGCTCCAG CGGGTAAAGC TCCGGCGAAA AAAGCCCCTA AGAAAGTTGC CGTTCCTGCA 
CGTAAGACTG AGCGCCCAGC AAAAGCGGCT CCAAAGGTCG AACCTGTAGT GAACTTAGTG 
CAAGCGCAAT TGACTGATTT AGCGAAGAAG CAACGTGTCA ATGTTAAGTT AGGTATGACG 
CCAGTAGCCG GCGTGATCAC CGACATTAAT AAAGAAGACA TTCATGTTCA GCTCGATAGC 
GGCTTAACGA TAAAAGTGAA AGCAGAACAT ATTCTGCTGT AA
 
Protein sequence
MESTDKLTDT NAILAYLYET FPLCFIAEGE TKPLKIGLFQ DLAERLADDS KVSKTQLRVA 
LRRYTSSWRY LKSVKAGAQR VDLDGQPCGE LEQEHIDHAQ AMLKESQEKA KAKRAAQTPK 
AAPAGKAPAK KAPKKVAVPA RKTERPAKAA PKVEPVVNLV QAQLTDLAKK QRVNVKLGMT 
PVAGVITDIN KEDIHVQLDS GLTIKVKAEH ILL