Gene SO_2571 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2571 
Symbol 
ID1170275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp2701334 
End bp2702761 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content48% 
IMG OID637344401 
ProductDEAD-box ATP dependent DNA helicase 
Protein accessionNP_718157 
Protein GI24374114 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCATTCT CCCAACTTGG ATTACACAGC GCGCTTGTTA AAGCCGTGAC TGAACTGGGT 
TACCAAAGCC CTACGCCAAT TCAAACTCAA GCCATTCCTA GCATTCTGGC GGGGAAAAAT
GTGCTGGCCG CCGCCCAAAC CGGTACGGGT AAAACCGCGA GTTTTGTATT GCCGTTACTG
CATCGATTTG CTGACGCCCC CAAAATTCGG CCTAAACGGG TGCGCTCCAT CATCCTTACC
CCCACACGGG AACTGGCGCT GCAGGTTGAA CAAAACATCA ATCAATATGC CAAATACCTG
CCGTTAACGG CCATGGCCAT GTACGGCGGC GTTGATGCTG CGCCGCAAAA AAAACGTCTG
ATTGAAGGGG TTGATCTGCT CGTTGCAACG CCTGGGCGTT TGCTGGATAT GTATACTCAA
AGAGCCATTC GCTTTGATGA AGTCTCCGTA TTAGTGCTGG ATGAAGCCGA TCGCATGCTA
GATATGGGTT TTATCGAAGA TATTAATAAC ATTATTGAAA AGCTGCCTGA GCAGCGGCAA
AACCTGTTAT TTTCGGCAAC CTTATCAAAA CAGGTCAAAG CACTGGCTAA AACCGCTATT
CCGGATGCCA TTGAGATTGA AATCAGTCGT AAAAATGCCG CTTCAACGCA AATTGATCAG
TGGTTAACGA CTGTCGATAA AGATCGAAAA TCAGCGCTAT TAAGCCATTT AATTAAAGAG
AATAACTGGG CGCAGGCATT AATCTTTATC CAAACCAAAC ATGGTGCAGC CAAGCTGGTT
AGCCAATTAG AAAAGCGTGG CATTGTTGCC GAAGCCTTCC ACAGTGGTCG TAGCCAAGCG
ATTCGCGAAC AACTGCTAAT CGATTTTAAA GCAGGTAAAG TGCCCTTTTT AGTCGCTACA
GGTGTTGTGT CACGCGGTAT CGATATCGAT GCGCTCGAGC GGGTGATTAA CTACGATTTA
CCCGATGAGG CCGATGATTA TATCCATCGC ATTGGCCGCA CCGGACGTGC CGGCAATCAA
GGTGAAGCCA TATCCTTTGT CTCTAAGGAC GATTTTAGAA ATCTATGCGC CATTGAGCGC
CGTTTAGGTC ATATTATCGA GCGCAAGAAC ATCGAGGGGT TTGAACCTAA AAAAGCGGTG
CCTATTTCAA TACTCGATTT TGTGCCTAAA TCAGCCTCAA GATCAGCGCA TAAGCCCAAC
AATACTGCGG CGGTAAAAGA TCAAGCATCG CCCTATTCCA GTGGGAAACC CGGCACCTTT
GAGGCAACTC AGGCTAAAAA GCACCGCAGT GCCAAAGCTA AGCCGCAATC CAAACAAGTG
GCAAGGTTAA CACCACCTCC AGTAAACGAA AGATCGGAAG CGCAGCGCAC ACAAGGTGAA
ACATCGCAAC CTTTTAATCC TTGGCACAGT GGGCCAAAAA CCAAATAA
 
Protein sequence
MPFSQLGLHS ALVKAVTELG YQSPTPIQTQ AIPSILAGKN VLAAAQTGTG KTASFVLPLL 
HRFADAPKIR PKRVRSIILT PTRELALQVE QNINQYAKYL PLTAMAMYGG VDAAPQKKRL
IEGVDLLVAT PGRLLDMYTQ RAIRFDEVSV LVLDEADRML DMGFIEDINN IIEKLPEQRQ
NLLFSATLSK QVKALAKTAI PDAIEIEISR KNAASTQIDQ WLTTVDKDRK SALLSHLIKE
NNWAQALIFI QTKHGAAKLV SQLEKRGIVA EAFHSGRSQA IREQLLIDFK AGKVPFLVAT
GVVSRGIDID ALERVINYDL PDEADDYIHR IGRTGRAGNQ GEAISFVSKD DFRNLCAIER
RLGHIIERKN IEGFEPKKAV PISILDFVPK SASRSAHKPN NTAAVKDQAS PYSSGKPGTF
EATQAKKHRS AKAKPQSKQV ARLTPPPVNE RSEAQRTQGE TSQPFNPWHS GPKTK