Gene SO_2530 details

Gene Information

• Locus tag: SO_2530
• Symbol: def
• ID: 1170239
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 2660149
• End bp: 2660640
• Gene Length: 492 bp
• Protein Length: 163 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637344363
• Product: peptide deformylase
• Protein accession: NP_718116
• Protein GI: 24374073
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGTAC TCGATATTCT GACAATTCCC GATGAGCGTC TAAAGCGCAA AGCACAACCC 
GTAAAAGATA TAGAAGCGAT TCAGGGATTT ATCGACGACT TAATCGAAAC CATGTACCAC 
ACTGACGATG GTATTGGTCT AGCTTCGACC CAAGTGGGCA GTACAGATGC GGTGATTGTG 
ATCGATTTGT CCGAAACGCG CGATCAACCT CTAGTGCTGG TTAATCCTGA AATTGTTGAA 
AAATCAGGCG AATACGTGGG TGAAGAAGGC TGTCTTTCAA TCCCGGGTTA CCGCGCAAAA 
GTCACTCGTT TTGAAAAGGT CAAAGTCACT GCTTTAGACA GACAGGGTAA AGCGATTGAA 
ATTGAAACCG ATGACTTTTT AGCCATTGTT TTACAACACG AAATCGACCA TTTACACGGT 
AAAGTGTTTA TCGAGCATCT TTCTACACTC AAGCAGCAAA TCGCGCTTAA AAAAGTGCGT 
AAATACGCTT AA 

 

Protein sequence

MAVLDILTIP DERLKRKAQP VKDIEAIQGF IDDLIETMYH TDDGIGLAST QVGSTDAVIV 
IDLSETRDQP LVLVNPEIVE KSGEYVGEEG CLSIPGYRAK VTRFEKVKVT ALDRQGKAIE 
IETDDFLAIV LQHEIDHLHG KVFIEHLSTL KQQIALKKVR KYA