Gene SO_2511 details

Gene Information

• Locus tag: SO_2511
• Symbol: rnfD
• ID: 1170222
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 2639225
• End bp: 2640274
• Gene Length: 1050 bp
• Protein Length: 349 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 637344346
• Product: electron transport complex protein RnfD
• Protein accession: NP_718098
• Protein GI: 24374055
• COG category: [C] Energy production and conversion
• COG ID: [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD
• TIGRFAM ID: [TIGR01946] electron transport complex, RnfABCDGE type, D subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGTTTA AAATAGCATC ATCACCCCAT GTAACCCGTA ATTTGCAGAC ATCAACAGTG 
ATGCAGCGGG TGATTTTATG CTTGCTCCCA GGACTTGTGG TGCAATGCGC CTTTTTTGGC 
TGGGGCACGC TTATCCAAGT ATTACTGGCG ATTATCGTGG CCTTAAGCTG TGAAGCGGCG 
GTGATGAAAC TGCGTAAGCG CAGCATCAAA GCGAGCCTTG GTGATAATAG CGCCATGCTC 
ACGGCCATCT TAATTGGGGT TGCCATTCCT CCGCTCGCGC CTTGGTGGAT GATCGTCATG 
GGCACCGCCT TTGCGATTGT TATCGTCAAG CATCTCTATG GCGGTTTAGG GCATAACCTG 
TTTAACCCGG CCATGGCCGC CTATGTGTTG TTACTGGTGT CGTTTCCGCT GCAGATGACA 
ACTTGGATTG CGCCAAGTAC CGTCGCACTC AATACCCCGA GTATTGTTGA TAGTCTGCAA 
CTTATCTTCA ATGTCGGCGC CCACGTAGGC ATGGAGCAAT TTCGCCTAGG CATTGATGGC 
ATCAGTATGG CAACACCGCT GGATACCTTA AAGACCGATC TTTCTTTAGG GCTAACAACG 
ACCGAGAGTA TGGCTAAAAG CATCTTTGAT GGCAGCACAG GTGTTGGTTG GTTTTGGGTC 
AATTTAGCCT ATTTAGCGGG CGGTATAGTG CTACTGAAGT TAAAAGCGAT CCGCTGGCAT 
ATTAGTACGG GGGTATTAGC GGGATTATTT GTGGCATCTA GCGTCGGCTT TTTATTATCG 
CCCGATACCC ATGCCAGCCC GCTGTTTCAT TTATTCTCTG GTGCCACCAT GCTTGCCGCC 
TTCTTTATTG CGACCGATCC CGTCACGGCC GCCACCAGTC CACGTGGCCG TATCATTTTC 
GGTGCGTTAA TTGGTGTCTT GGTGTATATC ATTCGCACCC AAGGTGGCTA CCCCGATGCG 
TTTGCCTTTG CTGTGCTACT CGCAAACCTG TGTGCACCAT TTATTGACTA TTATGTGCGT 
CCGCGCACCT ATGGCCACTC AGCGGGCTAG 

 

Protein sequence

MAFKIASSPH VTRNLQTSTV MQRVILCLLP GLVVQCAFFG WGTLIQVLLA IIVALSCEAA 
VMKLRKRSIK ASLGDNSAML TAILIGVAIP PLAPWWMIVM GTAFAIVIVK HLYGGLGHNL 
FNPAMAAYVL LLVSFPLQMT TWIAPSTVAL NTPSIVDSLQ LIFNVGAHVG MEQFRLGIDG 
ISMATPLDTL KTDLSLGLTT TESMAKSIFD GSTGVGWFWV NLAYLAGGIV LLKLKAIRWH 
ISTGVLAGLF VASSVGFLLS PDTHASPLFH LFSGATMLAA FFIATDPVTA ATSPRGRIIF 
GALIGVLVYI IRTQGGYPDA FAFAVLLANL CAPFIDYYVR PRTYGHSAG