Gene SO_2506 details

Gene Information

• Locus tag: SO_2506
• Symbol: uvrB
• ID: 1170217
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 2629715
• End bp: 2631736
• Gene Length: 2022 bp
• Protein Length: 673 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637344336
• Product: excinuclease ABC subunit B
• Protein accession: NP_718093
• Protein GI: 24374050
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0556] Helicase subunit of the DNA excision repair complex
• TIGRFAM ID: [TIGR00631] excinuclease ABC, B subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCAGAAT CTGTTTTTCA GCTTGAATCC CAATTTGCTC CCGCTGGTGA TCAGCCCACA 
GCCATCGCTA AATTGGTTGA TGGCCTCGAA TCTGGCCTAG CTTGCCAAAC CCTATTAGGG 
GTGACGGGCT CTGGTAAGAC GTTCACCATC GCCAATGTGA TAGCCAAGCT TGGGCGACCG 
ACCATTATTA TGGCGCCAAA CAAAACACTC GCCGCACAGT TATATGGTGA GATGAAAGAA 
TTTTTCCCCA ATAATGCGGT GGAATATTTT GTCTCCTATT ACGATTACTA TCAGCCAGAA 
GCGTATGTCC CCGCATCCAA TACCTTTATT GAAAAAGATG CCTCGGTAAA CGCCCATATT 
GAACAAATGC GGCTCTCGGC CACCAAAGCT TTGCTAGAGC GCAAGGATGT GGTGCTGATT 
GCCTCGGTGT CGGCGATTTA TGGTCTTGGC GATCCCGACT CTTACTTAAA GATGTTATTG 
CACCTACGCC AGGGCGATAC CATGGGGCAG CGGGATATTC TTAAACGGTT AAGTGAATTG 
CAATACACCC GCAATGATAT CGAGTTGCAG CGCGGCACGT TCCGCGTTCG CGGTGAAGTG 
ATTGATATTT TCCCTGCCGA TTCAGATCGC TACGCGATTC GAGTGGAGTT ATTTGACGAT 
GAGATTGAAC GCTTAAGCGA GTTCGATCCG TTAACCGGGC AGATTGTAAA GCGTATCGCC 
CGCACCACAG TGTACCCTAA GACCCACTAT GTGACGCCGC GGGAAAAAAT CCTTGAAGCC 
ACCGAGCTGA TTAAACAAGA GCTGCGTGAG CGCAAGCAAT ATCTGCTCGA CAATAATAAA 
TTGATTGAAG CGCAGCGGAT CCACGAGCGT GTGCAATATG ACATTGAAAT GATGGTGGAG 
CTAGGCTATT GCTCCGGCAT TGAAAACTAC TCCCGTTATT TATCAGGACG CGCCCCCGGC 
GAGGGGCCGC CAACGCTACT CGATTACTTA CCCGCTGATG GTTTATTGGT GATCGACGAA 
TCCCACGTTA CCGTGCCACA AATTGGTGCC ATGTATAAGG GTGACCGTTC CCGTAAAACG 
ACCTTGGTGG AATATGGCTT TCGTTTGCCC TCGGCGCTGG ATAACCGGCC GCTGAAGTTT 
GAAGAGTTTG AGCAGTTAAT GCCGCAGACG ATTTATGTGT CGGCGACGCC AAACTCCTAT 
GAATTGGAGA AGAGTGGCGG CGAGATTGTT GAACAAGTTG TGCGGCCTAC AGGATTGCTC 
GATCCTGAGC TTGAGGTGCG CCCCGTCGGT ATTCAAGTGG ACGATTTGCT CTCGGAAGTC 
GCTAAACGGG TTGCGGTAAA CGAGCGGGTG TTAGTCACCA CGTTAACTAA ACGTATGTCG 
GAGGATTTAA CTGAATACCT CGATGAACAT GGTGTCAAAG TCCGCTACTT ACACTCTGAT 
ATCGATACCG TAGAGCGGGT AGAGATCATT CGCGATTTGC GCCTCGGTAA GTTTGATGTG 
CTCGTCGGGA TTAACTTGCT CCGCGAAGGC TTAGATATGC CAGAAGTCTC ACTCGTCTGT 
ATTTTGGATG CGGATAAGGA AGGCTTTTTA CGCTCGGAAC GTTCACTGAT CCAAACCATT 
GGCCGTGCGG CGCGCAATGT GAATGGCAAG GTGATCCTCT ATGCCGATCG CATCACCAAC 
TCGATGGCAA AGGCGATAGG TGAAACCGAG CGCCGACGTG AGAAACAGCG TCTCTATAAC 
CTTGAGCACG GTATAGTGCC TAAAGGGGTG GTGAAACGCA TTACTGATGT GATGGATGTG 
GATGATGGCA GAGAGGCTGA AAAGGGTCAT GGTCAAGCAT CCCTTGGCAG AGTTGCTGAG 
CCTAAAGCGA AACGCTACCA TGCTGATGCC GCGCAGCTTA GCCATGATAT CGATAAGTTA 
GAAAAACAAA TGCACGAGCA TGCGCGTAAC TTGGAGTTTG AACAGGCGGC GGCCTTGCGT 
GATGAGGTGA AACGCTTAAG GGAATTACTG ATCAGCGCAT AA 

 

Protein sequence

MSESVFQLES QFAPAGDQPT AIAKLVDGLE SGLACQTLLG VTGSGKTFTI ANVIAKLGRP 
TIIMAPNKTL AAQLYGEMKE FFPNNAVEYF VSYYDYYQPE AYVPASNTFI EKDASVNAHI 
EQMRLSATKA LLERKDVVLI ASVSAIYGLG DPDSYLKMLL HLRQGDTMGQ RDILKRLSEL 
QYTRNDIELQ RGTFRVRGEV IDIFPADSDR YAIRVELFDD EIERLSEFDP LTGQIVKRIA 
RTTVYPKTHY VTPREKILEA TELIKQELRE RKQYLLDNNK LIEAQRIHER VQYDIEMMVE 
LGYCSGIENY SRYLSGRAPG EGPPTLLDYL PADGLLVIDE SHVTVPQIGA MYKGDRSRKT 
TLVEYGFRLP SALDNRPLKF EEFEQLMPQT IYVSATPNSY ELEKSGGEIV EQVVRPTGLL 
DPELEVRPVG IQVDDLLSEV AKRVAVNERV LVTTLTKRMS EDLTEYLDEH GVKVRYLHSD 
IDTVERVEII RDLRLGKFDV LVGINLLREG LDMPEVSLVC ILDADKEGFL RSERSLIQTI 
GRAARNVNGK VILYADRITN SMAKAIGETE RRREKQRLYN LEHGIVPKGV VKRITDVMDV 
DDGREAEKGH GQASLGRVAE PKAKRYHADA AQLSHDIDKL EKQMHEHARN LEFEQAAALR 
DEVKRLRELL ISA