| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2498 |
|---|
| Symbol | |
|---|
| ID | 1170211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 2623052 |
|---|
| End bp | 2625379 |
|---|
| Gene Length | 2328 bp |
|---|
| Protein Length | 775 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637344327 |
|---|
| Product | sensory box protein |
|---|
| Protein accession | NP_718085 |
|---|
| Protein GI | 24374042 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGATG TTGCTGTTTT GAATATAGAT AGTGTAATCT GCGTCAACAA AAATAATGAT
AAATCGACTC CATTAACACA GCTCTTTTTG GTGTTAGTTG CAGCAGAATC GTTTTACCCA
ACACGACGTT TTGTAGGGAT CAGAGTGAAG CGACGTCAGC ATCAGCACTT ATTAGAGTCT
TTAGTCCATT CTACGGCAAA GCAACAGGGT GATTTCACTA AGACGGCAGA GTTAGCGACA
GAGCTACTCT GTCAGAATTT AGCGGTTTCT TTGGTGTCAA TATGGATTTT TTCTGCCGAT
CAAGGCACGC AATCTCTTGT TGCTCAATTT GGCTCCATGG CGTTGCAGGA CACGTATCGT
CCCAGTCTGC TGCATACGGT GCCACGTTAT TTAAATGAAC TCAAAAATTA TCGCCATATT
GATGCAGGCA ATACCCTTAT CGACCCGCGA TTGACCGAAT TAGTCGATAG TTATTTTATT
CCACGCCAAA TTTTATCCAG TCTTGATGTC GGCATTCGCA TCAATGGTCA TCTTGAGGGC
GTGCTCTGTA TTGAACGGGC GCAGGTCACT CATCATTGGC ACGATAGTGA AATTCATCTT
GCTTGCCAAA TGGCCGATCA ATTAGCCCTC ACCCTCGCCA CAAAACATGC TTACGATAAA
GAAGAGCGCC TTAGTCTTTT CCGTTGTGCC ATAGAACAAT CTCGCCAGAT GAGTATGCTG
ATTAACTTGC ACACTGAAAA AGTGGAATAT GTTAATCAAG CCCATGAGGA TATTACTGGG
ATTGCGCGGG ATAAGAGTAT AGGCACTAAT TTACGCGATT TAACTTTTTT CAGGCAGCAC
AATGCGTTAG CTGAGCAGAC CTTAGCAAAA ATTTTCAGAG GGGATCAAGC AAAGGGTGAA
GTGCAATTTA GTCGTACAGA TGGCAGTCGT TACTGGCTGA AATACATCGT GAGCCAATTT
ATCACCGATA GAGGCAATCA TTACGCTTTA GTGTCGGGTG AAGAAAACTC CGATGAGCAT
AACTACAAAG CGGAGCTGGA GCGGTTGGCG TGGCGTTGTG GTTTGACAGG GCTTAACAAT
CGCAGTCACT TTAATCGCGT GCTCGAGCGA ACAACCCATG GATTACTCTT GTTGGTCGAT
TTGGTCGCCT TTAAGCGTTT TAATGATACT TATGGCCATG AAAATGGCGA TAGCCTGTTG
ATTGAGGTCG GTCGGCGCTT AAAACATTTT TCAGAAATTA ACAAAGCGAC TGAAATCGCC
CGCGTTGGTA GTGATGAATT TGCCGTGTTA CTCACCGACG ATAATGCGGT TTATGATCTC
GACTATTTCA GTACCCGCTT ATATCAGCAT TTAGCTATGC CGATATTAAT TGGCCGTGAG
CAAGTCGAAC CTAAGCCCGC GCTGGCCGTG GTTGATATTG CCTCCGTGGC GAATCTATTT
GCGCCACTGA CCTGCGCCGA TATCGCAGTG CAATACGCAA AGAAGAAAAA AGGTACAGCA
ATTCAAGTCT TTAACAGTAC ATTGCTGAGT GCATTTAAGG AAGACGCGCA AATTGAGCGC
GATTTACATA GTGCCATTCG TGGTCGCCAG TTTGAACTTT ATTATCAACC CTTAAGGGAC
CTTGAGCAGC AAACCTATAT CGGCGCCGAA GCCTTGATCC GCTGGCATCA TCCCAAGAAA
GGTGTGCTGT ATCCCGGCGC ATTTATCGAT ATTGCCGAAC AGTCAGGCAT GATTAACGCG
ATAGGCAGTT GGGTGTTAGA GGCGGCGTGT CGGCAATTGA ATATTTGGCA GCATCATAAT
GCCGATCTTA GCATGCACGT TAACGTGTCA GCGCGGCAGT TTTTTAGTGG TAATCTGTAT
GAGCAAGTGT GGCAGCTTTT GACCCGTTAT CGTTTAAAGC CCAAAACCTT AATTTTGGAA
ATCACTGAGA CGGAACTGAT GGGGGATATT CGCCATGCCA CCTTATTGTG TCAGGAGTTA
GCAGAACTGG GGGTTGGCTT AGCTATCGAC GATTTCGGCA CGGGTTACAG CTCGATGCGT
TACCTTAAAC AGTTCCCCAT CAGCAAGTTA AAAATCGATC GCTCGTTTAT CTCTGATTTG
ACCATTAGCC GCGAAAGTCA GGAAATTGTG TCAGCCATTA TTGCGATGGC CAATGCGCTC
AATATTTCCT TGACGGCCGA AGGGGTTGAA ACCGCTGAAC AGGAGGCATT TTTAGCCAAG
AGTTTGTGTC ATCAAGCGCA GGGATTTTTA TACAGCCCAG CCCTGCGAGA ACCCGAGTTT
GCACAGTTTT TACTGACGGC TAAACAACCG AATCTTATCG CGCACTAA
|
|---|
| Protein sequence | MADVAVLNID SVICVNKNND KSTPLTQLFL VLVAAESFYP TRRFVGIRVK RRQHQHLLES
LVHSTAKQQG DFTKTAELAT ELLCQNLAVS LVSIWIFSAD QGTQSLVAQF GSMALQDTYR
PSLLHTVPRY LNELKNYRHI DAGNTLIDPR LTELVDSYFI PRQILSSLDV GIRINGHLEG
VLCIERAQVT HHWHDSEIHL ACQMADQLAL TLATKHAYDK EERLSLFRCA IEQSRQMSML
INLHTEKVEY VNQAHEDITG IARDKSIGTN LRDLTFFRQH NALAEQTLAK IFRGDQAKGE
VQFSRTDGSR YWLKYIVSQF ITDRGNHYAL VSGEENSDEH NYKAELERLA WRCGLTGLNN
RSHFNRVLER TTHGLLLLVD LVAFKRFNDT YGHENGDSLL IEVGRRLKHF SEINKATEIA
RVGSDEFAVL LTDDNAVYDL DYFSTRLYQH LAMPILIGRE QVEPKPALAV VDIASVANLF
APLTCADIAV QYAKKKKGTA IQVFNSTLLS AFKEDAQIER DLHSAIRGRQ FELYYQPLRD
LEQQTYIGAE ALIRWHHPKK GVLYPGAFID IAEQSGMINA IGSWVLEAAC RQLNIWQHHN
ADLSMHVNVS ARQFFSGNLY EQVWQLLTRY RLKPKTLILE ITETELMGDI RHATLLCQEL
AELGVGLAID DFGTGYSSMR YLKQFPISKL KIDRSFISDL TISRESQEIV SAIIAMANAL
NISLTAEGVE TAEQEAFLAK SLCHQAQGFL YSPALREPEF AQFLLTAKQP NLIAH
|
|---|
| |