Gene SO_2487 details

Gene Information

• Locus tag: SO_2487
• Symbol: edd
• ID: 1170200
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 2608566
• End bp: 2610392
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637344316
• Product: phosphogluconate dehydratase
• Protein accession: NP_718074
• Protein GI: 24374031
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR01196] 6-phosphogluconate dehydratase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCACTCAG TCGTTCAATC TGTTACTGAC AGAATTATTG CCCGTAGCAA AGCATCTCGT 
GAAGCATACC TTGCTGCGTT AAACGATGCC CGTAACCATG GTGTACACCG AAGTTCCTTA 
AGTTGCGGTA ACTTAGCCCA CGGTTTTGCG GCTTGTAATC CCGATGACAA AAATGCATTG 
CGTCAATTGA CGAAGGCCAA TATTGGGATT ATCACCGCAT TCAACGATAT GTTATCTGCA 
CACCAACCCT ATGAAACCTA TCCTGATTTG CTGAAAAAAG CCTGTCAGGA AGTCGGTAGT 
GTTGCGCAGG TGGCTGGCGG TGTTCCCGCC ATGTGTGACG GCGTGACTCA AGGTCAGCCC 
GGTATGGAAT TGAGCTTACT GAGCCGTGAA GTGATTGCGA TGGCAACCGC GGTTGGCTTA 
TCACACAATA TGTTTGATGG AGCCTTACTC CTCGGTATTT GCGATAAAAT TGTACCGGGT 
TTACTGATTG GTGCCTTAAG TTTTGGCCAT TTACCTATGT TGTTTGTGCC CGCAGGCCCA 
ATGAAATCGG GTATTCCTAA TAAGGAAAAA GCTCGCATTC GTCAGCAATT TGCTCAAGGT 
AAGGTCGATA GAGCACAACT GCTCGAAGCG GAAGCCCAGT CTTACCACAG TGCGGGTACT 
TGTACCTTCT ATGGTACCGC TAACTCGAAC CAACTGATGC TCGAAGTGAT GGGGCTGCAA 
TTGCCGGGTT CATCTTTTGT GAATCCAGAC GATCCACTGC GCGAAGCCTT AAACAAAATG 
GCGGCCAAGC AGGTTTGTCG TTTAACTGAA CTAGGCACTC AATACAGTCC GATTGGTGAA 
GTCGTTAACG AAAAATCGAT AGTGAATGGT ATTGTTGCAT TGCTCGCGAC GGGTGGTTCA 
ACAAACTTAA CCATGCACAT TGTGGCGGCG GCCCGTGCTG CAGGTATTAT CGTCAACTGG 
GATGACTTTT CGGAATTATC CGATGCGGTG CCTTTGCTGG CACGTGTTTA TCCAAACGGT 
CATGCGGATA TTAACCATTT CCACGCTGCG GGTGGTATGG CTTTCCTTAT CAAAGAATTA 
CTCGATGCAG GTTTGCTGCA TGAGGATGTC AATACTGTCG CGGGTTATGG TCTGCGCCGT 
TACACCCAAG AGCCTAAACT GCTTGATGGC GAGCTGCGCT GGGTCGATGG CCCAACAGTG 
AGTTTAGATA CCGAAGTATT AACCTCTGTG GCAACACCAT TCCAAAACAA CGGTGGTTTA 
AAGCTGCTGA AGGGTAACTT AGGCCGCGCT GTGATTAAAG TGTCTGCCGT TCAGCCACAG 
CACCGTGTGG TGGAAGCGCC CGCAGTGGTG ATTGACGATC AAAACAAACT CGATGCGTTA 
TTTAAATCCG GCGCATTAGA CAGGGATTGT GTGGTGGTGG TGAAAGGCCA AGGGCCGAAA 
GCCAACGGTA TGCCAGAGCT GCATAAACTA ACGCCGCTGT TAGGTTCATT GCAGGACAAA 
GGCTTTAAAG TGGCACTGAT GACTGATGGT CGTATGTCGG GCGCATCGGG CAAAGTACCT 
GCGGCGATTC ATTTAACCCC TGAAGCGATT GATGGCGGGT TAATTGCAAA GGTACAAGAC 
GGCGATTTAA TCCGAGTTGA TGCACTGACC GGCGAGCTGA GTTTATTAGT CTCTGACACC 
GAGCTTGCCA CCAGAACTGC CACTGAAATT GATTTACGCC ATTCTCGTTA TGGCATGGGG 
CGTGAGTTAT TTGGAGTACT GCGTTCAAAC TTAAGCAGTC CTGAAACCGG TGCGCGTAGT 
ACTAGCGCCA TCGATGAACT TTACTAA 

 

Protein sequence

MHSVVQSVTD RIIARSKASR EAYLAALNDA RNHGVHRSSL SCGNLAHGFA ACNPDDKNAL 
RQLTKANIGI ITAFNDMLSA HQPYETYPDL LKKACQEVGS VAQVAGGVPA MCDGVTQGQP 
GMELSLLSRE VIAMATAVGL SHNMFDGALL LGICDKIVPG LLIGALSFGH LPMLFVPAGP 
MKSGIPNKEK ARIRQQFAQG KVDRAQLLEA EAQSYHSAGT CTFYGTANSN QLMLEVMGLQ 
LPGSSFVNPD DPLREALNKM AAKQVCRLTE LGTQYSPIGE VVNEKSIVNG IVALLATGGS 
TNLTMHIVAA ARAAGIIVNW DDFSELSDAV PLLARVYPNG HADINHFHAA GGMAFLIKEL 
LDAGLLHEDV NTVAGYGLRR YTQEPKLLDG ELRWVDGPTV SLDTEVLTSV ATPFQNNGGL 
KLLKGNLGRA VIKVSAVQPQ HRVVEAPAVV IDDQNKLDAL FKSGALDRDC VVVVKGQGPK 
ANGMPELHKL TPLLGSLQDK GFKVALMTDG RMSGASGKVP AAIHLTPEAI DGGLIAKVQD 
GDLIRVDALT GELSLLVSDT ELATRTATEI DLRHSRYGMG RELFGVLRSN LSSPETGARS 
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