| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2445 |
|---|
| Symbol | thiC |
|---|
| ID | 1170160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 2558537 |
|---|
| End bp | 2560702 |
|---|
| Gene Length | 2166 bp |
|---|
| Protein Length | 721 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637344278 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | NP_718035 |
|---|
| Protein GI | 24373992 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGTT TAGAATCGTC CTCAGAATCA ATTGCCGTGA ACATACTGGG GCAAACGAAC
CGCCGTGTGG CGCGCGCCCA GGCCCAAGCC TTTATCGATA CGCTTAAACC ATTACAACAT
CCTAATTCGC AAAAACTTTA TTTGCAGGGA AGCCGTGCGG ATTTACGTGT GGGGATGCGG
CAAATTCTGC AAACCGATAC GCGCATTGGT GGCCGCGCGG CGGCGCCCAA CGTTGAGAAA
AACCCTCCCA TTCCAGTGTA CGACTGCGCA GGTCCTTATT CCGATCCCGC AGCCCAAATC
AATGTGCGCC AAGGCCTAGC TAAACTCAGA TTACCGTGGA TTATTGAGCG CCAAGATACT
GAAGTGCTTG ATTGCACGAC CTCAGATTTT ACCCAGCAGC GCTTGAAGGA TGACGGGCTA
GATCACTTGC GTTTTGAAGC AGGTTCAAGC GCGATTATTC GCCCACGCCG CGCCTTACCG
GGTAAACGTG TGAGTCAACT ACACTATGCC CGCCAAGGGA TTATTACCCC TGAAATGGAG
TATGTGGCGA TTCGTGAAAA TATGGCACTT GCCGATGTGC AGGACGAAAT CTTAAACCGC
CGAGGCCAAG GTGAATCTTT TGGTGCCGTA ATTGGTAAAC CGATTACCCC TGAGTTTGTC
CGTGATGAAA TTGCCCGTGG TCGCGCCATT ATTCCGTTAA ATATCAATCA CCCTGAAGCC
GAACCTATGA CTATTGGCCG TAATTTTTTG GTGAAAGTGA ATGCCAATAT CGGTAATTCT
GCGGTCACGT CCTCCATTGA GGAGGAAGTG GAAAAGTTAG TCTGGTCAAC CCGTTGGGGC
GCGGACACCG TGATGGACTT GTCCACGGGA CGGTATATCC ATGAAACCCG CGAATGGATT
ATCCGCAACT CGCCAGTGCC GATTGGCACA GTACCGATTT ATCAAGCACT TGAAAAAGTC
AATGGTGTAG CTGAGCACCT TACTTGGGAA GTGTTTCGCG ATACTTTGAT TGAGCAAGCG
GAGCAGGGTG TTGATTACTT TACCATCCAC GCGGGCGTGT TATTGCGCTA TGTACCGATG
ACCGCCAAAC GGGTGACGGG GATTGTGTCC CGCGGTGGCT CGATTATGGC CAAATGGTGT
TTGAGCCATC ATCAAGAAAA CTTTCTTTAT ACCCATTTTC GTGAGATTTG CGAGCTATGT
GTCGCCTACG ATGTATCGCT GTCATTAGGC GACGGAATGC GTCCTGGCTC CATTGCCGAT
GCCAATGATG AGGCGCAATT TGCTGAGCTT GAAACCTTAG GCGAGCTGGT CAACATCGCC
TGGGAATACG ATGTGCAGAC CATTATCGAA GGGCCTGGGC ATATCCCGAT GCAGCTTATC
AAAGAGAATA TGGATAAGCA GCTTATCCAC TGCGCCGAGG CGCCGTTTTA TACTCTAGGG
CCGCAAATTA CTGATATTGC GCCGGGTTAC GATCATTTCA CCTCCGGAAT TGGGGCGGCG
ATGATCGCAT GGTATGGCTG CGCCATGCTC TGCTATGTGA CGCCTAAAGA GCATTTAGGT
TTGCCCAATA AGCAAGATGT CAAACAGGGG TTAATTGCCT ACAAGATTGC AGCCCATGCG
GCCGATATTG CTAAAGGTCA CCCGGGCGCG CAGATCCGCG ACAATGCGTT GTCTAAGGCG
CGTTTCGAAT TCCGCTGGGA AGATCAATAT AACCTCGGGC TCGATCCTGA CACTGCGCGA
GCCTATCACG ATGAATCCCT GCCACAGGAA TCGGCCAAGG TAGCGCATTT TTGCTCTATG
TGTGGCCCTA AGTTTTGCTC GATGAAGATC ACCCAAGATG TGCGTGACTA TGCAGCAAGC
CTTGAAGCGG ATGCAAAGGC ACAAAGCTTA GCTGCTGAGA CTGACGGAGC ACTTGCGCCA
TTAGGTTCCG TTCAGCAAGT GAAATCGGGA CATTCTGAAT TAAGTCATAT CGATGCCGAA
CTAAATTATA TCGCTGTCAA AACCCAAGAT GAGTTAACCG CCGCCATGGC GCAAAAGTCG
GCTGAGTTTG CGGCCTTGGG CGCTAAGCTG TATCTGCCGC TGGACAACGC CAATGCTGCC
AATGAATTGG CCAAGCATAA GGACGGGGCA AAGCTGCAAT CTAAGACGCA GGTTGCGAAG
GTATGA
|
|---|
| Protein sequence | MSSLESSSES IAVNILGQTN RRVARAQAQA FIDTLKPLQH PNSQKLYLQG SRADLRVGMR
QILQTDTRIG GRAAAPNVEK NPPIPVYDCA GPYSDPAAQI NVRQGLAKLR LPWIIERQDT
EVLDCTTSDF TQQRLKDDGL DHLRFEAGSS AIIRPRRALP GKRVSQLHYA RQGIITPEME
YVAIRENMAL ADVQDEILNR RGQGESFGAV IGKPITPEFV RDEIARGRAI IPLNINHPEA
EPMTIGRNFL VKVNANIGNS AVTSSIEEEV EKLVWSTRWG ADTVMDLSTG RYIHETREWI
IRNSPVPIGT VPIYQALEKV NGVAEHLTWE VFRDTLIEQA EQGVDYFTIH AGVLLRYVPM
TAKRVTGIVS RGGSIMAKWC LSHHQENFLY THFREICELC VAYDVSLSLG DGMRPGSIAD
ANDEAQFAEL ETLGELVNIA WEYDVQTIIE GPGHIPMQLI KENMDKQLIH CAEAPFYTLG
PQITDIAPGY DHFTSGIGAA MIAWYGCAML CYVTPKEHLG LPNKQDVKQG LIAYKIAAHA
ADIAKGHPGA QIRDNALSKA RFEFRWEDQY NLGLDPDTAR AYHDESLPQE SAKVAHFCSM
CGPKFCSMKI TQDVRDYAAS LEADAKAQSL AAETDGALAP LGSVQQVKSG HSELSHIDAE
LNYIAVKTQD ELTAAMAQKS AEFAALGAKL YLPLDNANAA NELAKHKDGA KLQSKTQVAK
V
|
|---|
| |