| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2434 |
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| Symbol | |
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| ID | 1170147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 2543523 |
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| End bp | 2546336 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637344265 |
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| Product | extracellular solute-binding protein |
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| Protein accession | NP_718024 |
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| Protein GI | 24373981 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGTTAG TGCTCCAGCT AATTGTGATC CTGTGTTGTG TTCTCTCGAA TAGCACAGTT
AACGCCAGTC AGGGACAGAC TGAATCGCTT ATTGTGGTGA TGGGAGAAGA CAGCTTTCCC
TATCAATTTG TGGATAACGA TGGCGAAGCA ACTGGGTTAT TAGTCGATCT TTGGAAGGAG
TGGGGCAAAC GCACCCATAC ACCACTCGTC TTTGTTGCGC GGCACTGGAA TGAATCCCTT
GCGCAATTGC AGCAGGGAAA AGCGCAAGTG CATATTGGGA TGGGCAAAAC GCCTGAGCGC
GAGCAGCGTT TTGATTTTGC TGACGCTATT GCCAACGTCA GCACCTATTT ATATCTGCAT
AAATCCTTGC AAGGCAAAAA AAATATCAAA GAACTGATCC CCTACCAAGT AGGGATTGTG
TCCGGATCTT CCCATGAAGC CGAACTGCGC CGCCTCGAAC CTGGGTTGGT GTTTAAATAC
TACCAAAGCC GTGAAACGCT GCTTGCGGGT GTCGCAGCAG GTGAGACGGT CGTGTTTGCA
GGGCTTGATG GTTATCTGCG CGATCCCGCT TCTAACCAAA CGATAGCGGT AAATTACCCC
CTCAATATTC GCATCCCTAT CAAAGCCATG CAATTTGTTC CGGCGGTAAT GAAAGGTAAT
ACCGAATTAC TGAATAAAAT TAAGGCGGGA TTTAATGGTT TTGATCCAAA ATTTATTCAA
CAAACTGAGC GACGCTGGTT AGGTTTTAAT GGGCAAAAAC CGGGCATTGT GGTAGCTATG
CAACTGGGAG TTGAGCCCTT TGTTGATTTA GGTGTTGATG GTTTACCCCA TGGTTTTTAT
GTGGATCTTT GGCGACTATG GTCAGCGAAA ACGGGCATTG ATATTAATTT TATTTCGGGA
GATATGAACG GCACAGTTAA CGATGTACGC CAAGGTTTAG CCGATGCCCA CATTGGTTAT
CCCGAAAGTG ACGACATGAA AACCGGATTA ACTCGCGCTT GGCAACTCTA TACGGTGAAG
AGTCGGCTGT TTTTATATCA GCAGCAATTA ACTGACTTAC TGAGTTTGAA GGGCAAGCGT
ATCGGTGTTG TGCCGACGGC ACCTTATTTA GTGTCGCTGC GTAAAGCTCT GCCTGATGTG
GCATTTCGTT ACTACGACAA TATGGATGCC ATGGTCGCGG CAGCAAGAGC GGGTGAGATC
ATCGGCTTTG TGGCTGCGGG GGCTTGGACT TCCCATTATT TACTGCAGAA CAAAGCATGG
GCCGATTTTC ATCAATATCC TGAACTGGAG TTTCCCACAG AGATTTATGT ATTAACTCGA
AGTGATGACC CTGGGTTGAC TCAGCGGATA ACTAACGGAT TTCGCAGCAT TAGCATGCAG
GAATTTGCTG ATGTTGAGCA AAAATGGATG CTTAATCCTA AAGACAGGAT CTTCAACCAA
GCCGGATTAC ACGGCATCCA ACTTTCAGCC AGTGAGCAAG AGTATCTTGC CAGTATAGAA
AGGATAAAGC TGGGTTATCT TAAGCAGTGG TTGCCGATGG AGTTTACCAA TGAACAAGGT
CAATTTGCCG GGATTAATAG CGATATTATC AATATGCTTT CTGAGCAACT AGGCCTTAAG
ATTCAGCCCA TTGCCTTTGA TGATTGGCAG TCGCTTATTG GTGCATTGCG AGCTGGGGAC
ATTGCACTTG CGGGCAGTAT TGCCCAAACC GCTGATAGGC AACGGCATAT TGTGTTTAGT
GATCCCTATT GGCCATCGCC TTGGGGGGTG GTATCACAGC TTGAGCAAGT CTCTGTCTTT
AATCTGGCAC AATTGGCGGG GCAAAGAGTG GCTGTGGTTG AAGGCTATCA TCTTGTTACT
CAACTGATGA CGCTTCAGCC TTCGCTTAAG CTGGTGCTGG TACCCAACAC GCAATCAGGG
CTTTTAGCGG TGACTGAAGG CAAAGCTGAT GTGTTTATTG ATAAGGTTGT GACCTTAGCT
TCCGAGTTAA AAACGGGCCA ATATTCTTTA CTTAAAATGT CATTATTAAG TGATTTAGCT
GATCAGCACA GTCATTTTGG TTTGAATCCG CAATTTAGCT CGTTGGCACC ATTAATCAAC
CGAGTATTAG CGCAGATCGA CCAGCAAAAA CAGCAACAAA TTTATTCCCA TTGGGTCAGC
TTTACTATTG CCACCGACGA TGGACAGTAC TTGCGTTGGA TCCGTTATTT ATTGTTTGGG
GCACTTGGAT TATCTTTGTT CATGGTCGTG GTGTTAGTGG TTAATCGTCG TTTAAAACGT
GAGATAACTC GCCGTATTGC CGCTGAAAAA CGTTTGCAAC ACGTTGCGAG CCATGATGTA
TTAACTCAGT TACCTAATCG AGGCTTACTC GATGATAGAT TATCGCAGGC ATTATTATCC
CATCGACGCG ATCAGAGCCA TTTTGCACTG CTGTTCATTG ATTTAGATGG ATTTAAACAA
GTTAATGATC AACATGGGCA CCCAATAGGT GATGCCTTGC TTTTACGCGT GGCGGGATTA
CTGACGCAAG CTATTCGCCA TTCTGATACG GTGGCACGAT TTGGTGGCGA TGAATTCGTT
ATCCTGCTAA ATCGTGTGCA AGATCTCGAT GCTGCGACCC AAGTTGCTGA TAATATTCTG
CACTCACTTT CGTCTCCCTT CACTATTGAA GGCGTAACGG TAGAAATTGC TGTGAGCATC
GGCGTGGTGA TTTATCCCCG CGATGGTGAT ACGGCGATCG AATTATTAAA AAAAGCGGAT
CAATTAATGT ATCAAGCCAA AACCGTGGGC GGGCGTTGCT ACCGCGTGGC TTGA
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| Protein sequence | MKLVLQLIVI LCCVLSNSTV NASQGQTESL IVVMGEDSFP YQFVDNDGEA TGLLVDLWKE
WGKRTHTPLV FVARHWNESL AQLQQGKAQV HIGMGKTPER EQRFDFADAI ANVSTYLYLH
KSLQGKKNIK ELIPYQVGIV SGSSHEAELR RLEPGLVFKY YQSRETLLAG VAAGETVVFA
GLDGYLRDPA SNQTIAVNYP LNIRIPIKAM QFVPAVMKGN TELLNKIKAG FNGFDPKFIQ
QTERRWLGFN GQKPGIVVAM QLGVEPFVDL GVDGLPHGFY VDLWRLWSAK TGIDINFISG
DMNGTVNDVR QGLADAHIGY PESDDMKTGL TRAWQLYTVK SRLFLYQQQL TDLLSLKGKR
IGVVPTAPYL VSLRKALPDV AFRYYDNMDA MVAAARAGEI IGFVAAGAWT SHYLLQNKAW
ADFHQYPELE FPTEIYVLTR SDDPGLTQRI TNGFRSISMQ EFADVEQKWM LNPKDRIFNQ
AGLHGIQLSA SEQEYLASIE RIKLGYLKQW LPMEFTNEQG QFAGINSDII NMLSEQLGLK
IQPIAFDDWQ SLIGALRAGD IALAGSIAQT ADRQRHIVFS DPYWPSPWGV VSQLEQVSVF
NLAQLAGQRV AVVEGYHLVT QLMTLQPSLK LVLVPNTQSG LLAVTEGKAD VFIDKVVTLA
SELKTGQYSL LKMSLLSDLA DQHSHFGLNP QFSSLAPLIN RVLAQIDQQK QQQIYSHWVS
FTIATDDGQY LRWIRYLLFG ALGLSLFMVV VLVVNRRLKR EITRRIAAEK RLQHVASHDV
LTQLPNRGLL DDRLSQALLS HRRDQSHFAL LFIDLDGFKQ VNDQHGHPIG DALLLRVAGL
LTQAIRHSDT VARFGGDEFV ILLNRVQDLD AATQVADNIL HSLSSPFTIE GVTVEIAVSI
GVVIYPRDGD TAIELLKKAD QLMYQAKTVG GRCYRVA
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