Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_2434 |
Symbol | |
ID | 1170147 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 2543523 |
End bp | 2546336 |
Gene Length | 2814 bp |
Protein Length | 937 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637344265 |
Product | extracellular solute-binding protein |
Protein accession | NP_718024 |
Protein GI | 24373981 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAGTTAG TGCTCCAGCT AATTGTGATC CTGTGTTGTG TTCTCTCGAA TAGCACAGTT AACGCCAGTC AGGGACAGAC TGAATCGCTT ATTGTGGTGA TGGGAGAAGA CAGCTTTCCC TATCAATTTG TGGATAACGA TGGCGAAGCA ACTGGGTTAT TAGTCGATCT TTGGAAGGAG TGGGGCAAAC GCACCCATAC ACCACTCGTC TTTGTTGCGC GGCACTGGAA TGAATCCCTT GCGCAATTGC AGCAGGGAAA AGCGCAAGTG CATATTGGGA TGGGCAAAAC GCCTGAGCGC GAGCAGCGTT TTGATTTTGC TGACGCTATT GCCAACGTCA GCACCTATTT ATATCTGCAT AAATCCTTGC AAGGCAAAAA AAATATCAAA GAACTGATCC CCTACCAAGT AGGGATTGTG TCCGGATCTT CCCATGAAGC CGAACTGCGC CGCCTCGAAC CTGGGTTGGT GTTTAAATAC TACCAAAGCC GTGAAACGCT GCTTGCGGGT GTCGCAGCAG GTGAGACGGT CGTGTTTGCA GGGCTTGATG GTTATCTGCG CGATCCCGCT TCTAACCAAA CGATAGCGGT AAATTACCCC CTCAATATTC GCATCCCTAT CAAAGCCATG CAATTTGTTC CGGCGGTAAT GAAAGGTAAT ACCGAATTAC TGAATAAAAT TAAGGCGGGA TTTAATGGTT TTGATCCAAA ATTTATTCAA CAAACTGAGC GACGCTGGTT AGGTTTTAAT GGGCAAAAAC CGGGCATTGT GGTAGCTATG CAACTGGGAG TTGAGCCCTT TGTTGATTTA GGTGTTGATG GTTTACCCCA TGGTTTTTAT GTGGATCTTT GGCGACTATG GTCAGCGAAA ACGGGCATTG ATATTAATTT TATTTCGGGA GATATGAACG GCACAGTTAA CGATGTACGC CAAGGTTTAG CCGATGCCCA CATTGGTTAT CCCGAAAGTG ACGACATGAA AACCGGATTA ACTCGCGCTT GGCAACTCTA TACGGTGAAG AGTCGGCTGT TTTTATATCA GCAGCAATTA ACTGACTTAC TGAGTTTGAA GGGCAAGCGT ATCGGTGTTG TGCCGACGGC ACCTTATTTA GTGTCGCTGC GTAAAGCTCT GCCTGATGTG GCATTTCGTT ACTACGACAA TATGGATGCC ATGGTCGCGG CAGCAAGAGC GGGTGAGATC ATCGGCTTTG TGGCTGCGGG GGCTTGGACT TCCCATTATT TACTGCAGAA CAAAGCATGG GCCGATTTTC ATCAATATCC TGAACTGGAG TTTCCCACAG AGATTTATGT ATTAACTCGA AGTGATGACC CTGGGTTGAC TCAGCGGATA ACTAACGGAT TTCGCAGCAT TAGCATGCAG GAATTTGCTG ATGTTGAGCA AAAATGGATG CTTAATCCTA AAGACAGGAT CTTCAACCAA GCCGGATTAC ACGGCATCCA ACTTTCAGCC AGTGAGCAAG AGTATCTTGC CAGTATAGAA AGGATAAAGC TGGGTTATCT TAAGCAGTGG TTGCCGATGG AGTTTACCAA TGAACAAGGT CAATTTGCCG GGATTAATAG CGATATTATC AATATGCTTT CTGAGCAACT AGGCCTTAAG ATTCAGCCCA TTGCCTTTGA TGATTGGCAG TCGCTTATTG GTGCATTGCG AGCTGGGGAC ATTGCACTTG CGGGCAGTAT TGCCCAAACC GCTGATAGGC AACGGCATAT TGTGTTTAGT GATCCCTATT GGCCATCGCC TTGGGGGGTG GTATCACAGC TTGAGCAAGT CTCTGTCTTT AATCTGGCAC AATTGGCGGG GCAAAGAGTG GCTGTGGTTG AAGGCTATCA TCTTGTTACT CAACTGATGA CGCTTCAGCC TTCGCTTAAG CTGGTGCTGG TACCCAACAC GCAATCAGGG CTTTTAGCGG TGACTGAAGG CAAAGCTGAT GTGTTTATTG ATAAGGTTGT GACCTTAGCT TCCGAGTTAA AAACGGGCCA ATATTCTTTA CTTAAAATGT CATTATTAAG TGATTTAGCT GATCAGCACA GTCATTTTGG TTTGAATCCG CAATTTAGCT CGTTGGCACC ATTAATCAAC CGAGTATTAG CGCAGATCGA CCAGCAAAAA CAGCAACAAA TTTATTCCCA TTGGGTCAGC TTTACTATTG CCACCGACGA TGGACAGTAC TTGCGTTGGA TCCGTTATTT ATTGTTTGGG GCACTTGGAT TATCTTTGTT CATGGTCGTG GTGTTAGTGG TTAATCGTCG TTTAAAACGT GAGATAACTC GCCGTATTGC CGCTGAAAAA CGTTTGCAAC ACGTTGCGAG CCATGATGTA TTAACTCAGT TACCTAATCG AGGCTTACTC GATGATAGAT TATCGCAGGC ATTATTATCC CATCGACGCG ATCAGAGCCA TTTTGCACTG CTGTTCATTG ATTTAGATGG ATTTAAACAA GTTAATGATC AACATGGGCA CCCAATAGGT GATGCCTTGC TTTTACGCGT GGCGGGATTA CTGACGCAAG CTATTCGCCA TTCTGATACG GTGGCACGAT TTGGTGGCGA TGAATTCGTT ATCCTGCTAA ATCGTGTGCA AGATCTCGAT GCTGCGACCC AAGTTGCTGA TAATATTCTG CACTCACTTT CGTCTCCCTT CACTATTGAA GGCGTAACGG TAGAAATTGC TGTGAGCATC GGCGTGGTGA TTTATCCCCG CGATGGTGAT ACGGCGATCG AATTATTAAA AAAAGCGGAT CAATTAATGT ATCAAGCCAA AACCGTGGGC GGGCGTTGCT ACCGCGTGGC TTGA
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Protein sequence | MKLVLQLIVI LCCVLSNSTV NASQGQTESL IVVMGEDSFP YQFVDNDGEA TGLLVDLWKE WGKRTHTPLV FVARHWNESL AQLQQGKAQV HIGMGKTPER EQRFDFADAI ANVSTYLYLH KSLQGKKNIK ELIPYQVGIV SGSSHEAELR RLEPGLVFKY YQSRETLLAG VAAGETVVFA GLDGYLRDPA SNQTIAVNYP LNIRIPIKAM QFVPAVMKGN TELLNKIKAG FNGFDPKFIQ QTERRWLGFN GQKPGIVVAM QLGVEPFVDL GVDGLPHGFY VDLWRLWSAK TGIDINFISG DMNGTVNDVR QGLADAHIGY PESDDMKTGL TRAWQLYTVK SRLFLYQQQL TDLLSLKGKR IGVVPTAPYL VSLRKALPDV AFRYYDNMDA MVAAARAGEI IGFVAAGAWT SHYLLQNKAW ADFHQYPELE FPTEIYVLTR SDDPGLTQRI TNGFRSISMQ EFADVEQKWM LNPKDRIFNQ AGLHGIQLSA SEQEYLASIE RIKLGYLKQW LPMEFTNEQG QFAGINSDII NMLSEQLGLK IQPIAFDDWQ SLIGALRAGD IALAGSIAQT ADRQRHIVFS DPYWPSPWGV VSQLEQVSVF NLAQLAGQRV AVVEGYHLVT QLMTLQPSLK LVLVPNTQSG LLAVTEGKAD VFIDKVVTLA SELKTGQYSL LKMSLLSDLA DQHSHFGLNP QFSSLAPLIN RVLAQIDQQK QQQIYSHWVS FTIATDDGQY LRWIRYLLFG ALGLSLFMVV VLVVNRRLKR EITRRIAAEK RLQHVASHDV LTQLPNRGLL DDRLSQALLS HRRDQSHFAL LFIDLDGFKQ VNDQHGHPIG DALLLRVAGL LTQAIRHSDT VARFGGDEFV ILLNRVQDLD AATQVADNIL HSLSSPFTIE GVTVEIAVSI GVVIYPRDGD TAIELLKKAD QLMYQAKTVG GRCYRVA
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