Gene SO_2420 details

Gene Information

• Locus tag: SO_2420
• Symbol: sppA
• ID: 1170135
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 2528948
• End bp: 2530792
• Gene Length: 1845 bp
• Protein Length: 614 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637344253
• Product: signal peptide peptidase SppA, 67K type
• Protein accession: NP_718010
• Protein GI: 24373967
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0616] Periplasmic serine proteases (ClpP class)
• TIGRFAM ID: [TIGR00705] signal peptide peptidase SppA, 67K type; [TIGR00706] signal peptide peptidase SppA, 36K type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCGCTA ACCCATCGTT TTTCAAGAGA ATATGCTTAT TCATTTGGAA CGTCCTTAAC 
GGGACACGTA AACTTATACT CAACCTGATT TTTTTTGGTT TCTTAGCACT TATTCTGATA 
GCCATTGGCA GCAGTGAAGA CATAAAGGTC GAAGATAACT CTGCACTTGT GCTTAATCTT 
GCAGGTTCAA TTGTCGATCA AAAACAACAA GTTGATCCGA TTGAAGCCGC GCTCAAGCAA 
GGTAATAACG GCAGCAGCGA CGGTGAAATC TTGCTCGCGG ATATTATTTA TGTGATTGAT 
AATGCTACAC ATGATAATAG GATAAGCACT ATCGTTTTGG ACTTAGCTGA GTTAAAGCGA 
GCCGGGATCA GTAAATTGCA ATCTATCGGT GATGCCCTTA ATCGCTTTAA AGAAAGCGGC 
AAAAAAGTCG TTGCCATTGG CAATTATTAC GAACAAAACC AATATTTTCT CGCCAGCTTT 
GCTACTACCA TTTACCTCAA TCCTCAAGGC AGCGTATCCC TTGATGGATT AAGTATGTAC 
AACCAATACT TCAAATCCGC ACTCGAGAAA CTCAAGATAA AAGCGCATAT CTTCCGCGTT 
GGGACGTTTA AATCCGCTGT AGAGCCCTAT ATGCGTGACG ATATGTCGGA TGCAGCCAGA 
GAAGCCAGCA GTGCCCTACT CGCTGATATA TGGCAAAGTT ATACCCAAAC GGTTGCAAAA 
AATCGCCAAA TCGATGCCAA TGCGTTAGTG CTAGATTCTC CGAGCTATCT GGCTCAGTTA 
GATAAAGCCG AAGGCGACTC CGCGACTATG GCCCTCAATA TGAAATGGGT CGATACGCTA 
GCGACCGATG AAGAGTTTCG TAAAATCATG CTCGATGCCG TGGGCAAAGA GAACAATGGC 
GACAGCTTCA AACAGGTTAG CTTTTACGAT TATTTAACCT TAGTGACACC TCTACCAAGC 
TTTATTGAGC AAGACAGTGT CGGCATTATC GTTGCGAGCG GTACTATTCT GAATGGTAGC 
CAACCTGCTG GCCAGATTGG TGGTGATAGC ACGGCAGATC TACTGCGTAA GGCTCGCTTT 
GATAAGCATA TCAAAGCACT GGTATTGCGA GTTGACAGCC CTGGCGGTAG CGCATTCGCC 
TCAGAGCAAA TTCGCCAAGA ATTGCTCGCC CTTAAAGCTG CCGGTAAACC TGTTGTCGTA 
AGCATGGGCA GTCTTGCGGC CTCAGGCGGT TATTGGATTT CGGCTAGTGC AGATTATATC 
TTCGCAACGC CAACCACACT GACAGGCTCC ATCGGCATCT TCGGTATGAT CACTACCTTT 
GAAGACTCCC TTGCAAGCTT AGGCATTCAT ACCGACGGCG TATCGACCTC GGAATGGGCG 
GGTCTGTCTG TAACCCGTAC CCTATCACCG CAAATCGAGT CAGTGATTCA GCGCCATATT 
GAGCGTGGCT ACTTAGACTT TATTTCGCTG GTCGCCAAAG AACGAAAAAT CAGCTTAGAG 
CAAGTAGATA AAATCGCCCA AGGCCGAGTG TGGAGCGGCA AAAAAGCACT CGAATTAGGC 
TTAGTGGACG AGCTCGGTGA TATCGACCAA GCCGTTACGA AAGCGGCCCA ATTGGCGAAT 
TTGAGCCTGT TCGATACCCG CCTCATTGAG CAAGAATTGA CGCCAGAGCA ACGTTTTGTG 
CAGCAAATGT TTGCTTCAGT TTCCGCTTAT TTACCCGCAT CACTCAGTCA TTCAACACTA 
CTTGAGCAAA TGCTGAATCA ATGGACAGGC AGCTTAAAAA CTATCGCCGC ATTTAATGAT 
CCAAATCATG TGTATGTGTA TTGTGATAGC TGTGTAATTA ACTAA 

 

Protein sequence

MSANPSFFKR ICLFIWNVLN GTRKLILNLI FFGFLALILI AIGSSEDIKV EDNSALVLNL 
AGSIVDQKQQ VDPIEAALKQ GNNGSSDGEI LLADIIYVID NATHDNRIST IVLDLAELKR 
AGISKLQSIG DALNRFKESG KKVVAIGNYY EQNQYFLASF ATTIYLNPQG SVSLDGLSMY 
NQYFKSALEK LKIKAHIFRV GTFKSAVEPY MRDDMSDAAR EASSALLADI WQSYTQTVAK 
NRQIDANALV LDSPSYLAQL DKAEGDSATM ALNMKWVDTL ATDEEFRKIM LDAVGKENNG 
DSFKQVSFYD YLTLVTPLPS FIEQDSVGII VASGTILNGS QPAGQIGGDS TADLLRKARF 
DKHIKALVLR VDSPGGSAFA SEQIRQELLA LKAAGKPVVV SMGSLAASGG YWISASADYI 
FATPTTLTGS IGIFGMITTF EDSLASLGIH TDGVSTSEWA GLSVTRTLSP QIESVIQRHI 
ERGYLDFISL VAKERKISLE QVDKIAQGRV WSGKKALELG LVDELGDIDQ AVTKAAQLAN 
LSLFDTRLIE QELTPEQRFV QQMFASVSAY LPASLSHSTL LEQMLNQWTG SLKTIAAFND 
PNHVYVYCDS CVIN