Gene SO_2399 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2399 
Symbol 
ID1170116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp2503170 
End bp2504330 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content45% 
IMG OID637344234 
Producttetratricopeptide repeat protein 
Protein accessionNP_717989 
Protein GI24373946 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2956] Predicted N-acetylglucosaminyl transferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTGAGA TCCTCTTCCT GTTGCTCCCA ATAGCTGCCG GTTACGGTTG GTATATGGGA 
CGGCGGAGTA TAAGGCAAAA TCAGAGTAAT CAGCGTAAAC AATTAAGTCG TGATTATTTC 
ACTGGCTTGA ATTTCCTGTT GTCTAACGAG TCGGACAAAG CGGTCGACTT GTTTATCAGT 
ATGCTCGATG TGGACGATGA AACCATCGAT ACCCATCTGT CCCTCGGTTC TTTATTCCGT 
AAGCGCGGTG AAGTTGACCG CTCGATTCGT ATTCACCAAA ACTTAATTGC CCGCCCAACA 
TTGACCAATG AACAGCGCGA TATCGCCATG ATGGAGCTGG GCAAAGACTA TCTTGCAGCG 
GGATTTTATG ATCGCGCCGA GGAAATTTTT CTAAATTTAG TCAGTCAAGA TGACCATAGC 
GAAGAGTCAG AGACACAATT AATTGCGATT TACCAAGTGA TTAAGGAATG GCAAAAGGCT 
ATCGATATCA CCAAACGTTT AAGCCGTAAA CGGCAGCAGG TGCTCAAACC GATTACAGCA 
CATTTTTATT GTCAGCTTGC CGATGAAACC AGCGATGATG CAGAGAAGAT CAAGTTACTG 
CAGCAAGCCC TAAAACAAGA TCCCAAATGT GGCCGCGCCT TATTGACCCT TGCCAAGAAA 
TTCCTCGATG CGAAGGATTA CAGCCAGTGT AAATCCATGC TTATAGCCTT AAAAAAGGCT 
GATATTGAGC TTTTTGCCGA TGCATTACCG ACGGCGAAAC AAGTGTATCG CGATACCCAA 
GATAAAGAGG GCTATCAAGA GTTATTGGCA GGCGCTATGG CTGAAGGCGC TGGTGTATCC 
GTGGTGGTTG CGCTTGCCCA ACATATGATA AGCCTTGATG AGATAAAAGC CGCCGAAAAC 
ATGGTGCTGG ATGCGCTGTA TCGCCATCCT ACCATGAAGG GCTTTCAGCA CTTAATGCAG 
ATGCATTTAC GCCAAGCAGA AGAAGGGCAA GCCAAACAAA GTTTGACTAT GCTTGAGCAA 
CTTGTTGAAC AACAAATTAA ATTCCGTCCA AGCTATCGCT GTAAAGAATG TGGTTTTCCA 
TCCCATACGC TGTATTGGCA TTGTCCTTCT TGCAAAAAAT GGGGCACCAT TAAACGGATA 
CGAGGATTGG ACGGTGAATA A
 
Protein sequence
MLEILFLLLP IAAGYGWYMG RRSIRQNQSN QRKQLSRDYF TGLNFLLSNE SDKAVDLFIS 
MLDVDDETID THLSLGSLFR KRGEVDRSIR IHQNLIARPT LTNEQRDIAM MELGKDYLAA 
GFYDRAEEIF LNLVSQDDHS EESETQLIAI YQVIKEWQKA IDITKRLSRK RQQVLKPITA 
HFYCQLADET SDDAEKIKLL QQALKQDPKC GRALLTLAKK FLDAKDYSQC KSMLIALKKA 
DIELFADALP TAKQVYRDTQ DKEGYQELLA GAMAEGAGVS VVVALAQHMI SLDEIKAAEN 
MVLDALYRHP TMKGFQHLMQ MHLRQAEEGQ AKQSLTMLEQ LVEQQIKFRP SYRCKECGFP 
SHTLYWHCPS CKKWGTIKRI RGLDGE