Gene SO_2384 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2384 
Symbol 
ID1170102 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp2486058 
End bp2487167 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content40% 
IMG OID637344220 
Productphage integrase family site specific recombinase 
Protein accessionNP_717974 
Protein GI24373931 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAAAT CGATTCAAAT TTATACCGCG GATGACAGTC ATTCTCATCA AGCGGTGGGT 
ATAAGCGCGA ATTTAACAAA GCCATTTACA CAAGGTGATA AGACATTTTT TGAAGAAAGT 
TCACTTCCTC AATCCGTGCA TGCTGACTTT TATAATGCAG CTTCCGAAAC TGAGTATGAA 
ATATCCAACA ATACTCGCCG TGTATATCGA ATTAGCTTTA GTTTTTTTGA ACAGTATTGC 
CTCGAACATA ATCTGCAATC TTTACCAGCC GATCCGCGCA GTATTATTTC ATTTATCGGT 
CATCAAAAAG AATTACTGCA AGCTAGCACT GGGATGCAGC TTTCCAAACA AACTTTAACT 
ACGCGGATTG CCGCCATTCG TTTCTACCAT ATTCAAGCAG GTTTTCCGAC ACCTACTGAG 
CACCCGCAGG TGATTCGAGT CATGCGCGGT TTGAGTCGTA ATCATCATCG TCTAGTTCAA 
GATTATGATC AGCAACCCAT AATGTACGAT GAAGTTGAAT TATTGATCCA AGCTGTAGAT 
CAACAGCCCC ATCCCCTACT TCGTCTAAGA GACAAGGCCA TCATTCAACT CGGTTTACAG 
GGGGGATTTC GCCGCTCCGA ATTAGCAAAT TTGAAGGTGC ATTATTTAAG TTTTATGCGG 
GATAAATTAA AAGTGCGTCT GCCCTTTTCT AAAAGTAATC AGCAAGGGTT AAGAGAGTGG 
AAGAGTTTAC CCGATTCTGA ACCTTTTGCG GCTTATCATG CAGTAAAATC ATGGTTAAAT 
GAAAGTCAGA TCACTGATGG GCATTTATTT CGATCTATTT CCCGTGATGG CAAGACATTA 
AGACCGTATC ACGTAAACGA TAATAGTAAG CCCAAATCTA CATTTAGCCG AAATAGTGGT 
TTCTTAAATG GAGATGATAT TTATCGGATC ATTAAACAAT ATTGTCTAAA AGCTGGATTA 
CCCGCGCAAT ATTATGGCGC CCATAGTTTA CGAAGTGGGT GTGTTACACA ACTACATGAA 
AATAATAAAG ATATATTGTA CATCATGGCT CGTACAGGGC ATACTGATCC GCGCTCCTTA 
CGCCATTATC TAAAACCGAA AGAAGATTAA
 
Protein sequence
MSKSIQIYTA DDSHSHQAVG ISANLTKPFT QGDKTFFEES SLPQSVHADF YNAASETEYE 
ISNNTRRVYR ISFSFFEQYC LEHNLQSLPA DPRSIISFIG HQKELLQAST GMQLSKQTLT 
TRIAAIRFYH IQAGFPTPTE HPQVIRVMRG LSRNHHRLVQ DYDQQPIMYD EVELLIQAVD 
QQPHPLLRLR DKAIIQLGLQ GGFRRSELAN LKVHYLSFMR DKLKVRLPFS KSNQQGLREW 
KSLPDSEPFA AYHAVKSWLN ESQITDGHLF RSISRDGKTL RPYHVNDNSK PKSTFSRNSG 
FLNGDDIYRI IKQYCLKAGL PAQYYGAHSL RSGCVTQLHE NNKDILYIMA RTGHTDPRSL 
RHYLKPKED