Gene SO_2345 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2345 
SymbolgapA-2 
ID1170067 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp2452794 
End bp2453804 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content45% 
IMG OID637344181 
Productglyceraldehyde 3-phosphate dehydrogenase 
Protein accessionNP_717935 
Protein GI24373892 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTATCC GTGTTGCAAT AAATGGTTAC GGCCGTATCG GTAGAAACGT ATTACGCGCC 
CTGTACGAAA GCGAAAAAGC ATACCCAATC AAAATTGTGG CCATCAACGA TTTAGGCGAT 
GCATCAATCA ACGCTCACCT GACCAAATAC GATTCTGTAC ATGGTCGTTT CAATGCGAAA 
GTTGAGCATG ATGCCGAAGC AATTTATGTT AACGGTGACA AGATCCTTAC CTTTCAAGAA 
CGCGATCCAG GCAAATTACC TTGGAACGAC TTACAAGTTG ACGTAGTTTT CGAATGTACC 
GGTATCTTCA CGTCCAAGGA ATCAGTGCAG CCACATTTAG CGGCGGGCGC AAAGAAAGTT 
ATTATCTCAG CTCCTGGTAA AAATGTTGAT GCAACCGTAG TTTACGGCGT GAACAACAAT 
GTACTGACCT CAGATATGAC TGTGATTTCA AATGCGTCAT GTACCACCAA CTGTTTAGCG 
CCTTTTGCTA AGCCGTTAAA TGACGAAATT GGTATTGAAT CTGGTTTAAT GACCACCATT 
CATGCCTATA CTAACGATCA ACGTTTATCA GATGTCTACC ACACTGATTT ACGCCGTGCC 
CGCGCTGCGG CACTGTCGAT GATCCCAACC AAGACGGGTG CAGCTGCAGC AGTTGGTTTA 
GTCGTGCCGG AATTACAAGG CAAATTCGAC GGTTTAGCAG TACGTGTACC CACTGTAAAC 
GTGTCTTTAG TAGATTTGTC TTTCATTGCA TCACGTGACA CTACCGTTGA AGAAGTTAAC 
GCGATTATCG AACGTGCAGC AAGCGTTGCG CCACTGAGCG AAGTGTTAGC GGTAAATAAA 
GAACCATTGG TGTCTATCGA CTTTAACCAC AATGCGTTTT CATCTAATTT CGATGCGACC 
CAAACCCGCG TTAATGGCCG TTTAGTCAAA GTAATGGCTT GGTACGATAA CGAATGGGGT 
TTCAGTAACC GTATGTTAGA CAACGCGGTT GCGTTAATGA ACGCCAAATA A
 
Protein sequence
MTIRVAINGY GRIGRNVLRA LYESEKAYPI KIVAINDLGD ASINAHLTKY DSVHGRFNAK 
VEHDAEAIYV NGDKILTFQE RDPGKLPWND LQVDVVFECT GIFTSKESVQ PHLAAGAKKV 
IISAPGKNVD ATVVYGVNNN VLTSDMTVIS NASCTTNCLA PFAKPLNDEI GIESGLMTTI 
HAYTNDQRLS DVYHTDLRRA RAAALSMIPT KTGAAAAVGL VVPELQGKFD GLAVRVPTVN 
VSLVDLSFIA SRDTTVEEVN AIIERAASVA PLSEVLAVNK EPLVSIDFNH NAFSSNFDAT 
QTRVNGRLVK VMAWYDNEWG FSNRMLDNAV ALMNAK