| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2255 |
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| Symbol | mfd |
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| ID | 1169985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 2367847 |
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| End bp | 2371341 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637344102 |
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| Product | transcription-repair coupling factor |
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| Protein accession | NP_717851 |
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| Protein GI | 24373808 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACATA TTTCAGCCCT AACACCGCCC GTTGTAAAAA ATGGCACTCA AATGCAAACT
CTGTCATGTA TCGCCGGAGT GGGTCAAGCT GTCACCCTTG CCAGTCTTAT TCGTCAACAC
CAAGGCACCA CGCTGATTGT CACCAGTGAC ACGCCAACGG CATTGAGTCT CGAGTTAGAG
CTCAATTATT TATTGGCAAA AACCGCCATT AAGGTGCGGC TGTTCCCTGA TCGTGAAACC
CTGCCCTACG ACAGTTTTTC ACCCCATCAG GATTTGATTT CCCAGCGTTT GGAAACTCTG
TCACAAATCA CCCATGCCGA GCACAGCGTG GTTATCGTGC CAGTGACAAC GCTGATGATG
CGCTTGCCGC CTAAATCCTA TTTAAGTTCC AATGTATTTG TGCTTAAAAA GGGCGATAAA
TATCAACTCC ATGATGTGCG CCAGCAATTA ACCGACACGG GTTATCACTT AGTTGAGCAG
GTTTACGAGC ACGGTGAGTT TGCCATTAGG GGCTCGATCC TCGATATCTT CCCCACTGGC
GTGAATATGC CGCTGCGTAT CGAGCTTTTC GATGATGAAG TCGAAACCAT TCGCCATTTC
GACCCAGAGA CCCAGCGATC CTCTACACCC GTCAATGCTG TGCGGTTATT ACCGGCGAAG
GAATTCCCAA CCGATAGCAG TGCCATCGAA GGCTTTAGAC AACGCTATCG CCGCCGTTTT
GAGGTGATCG TTAAAGAACC AGAATCGGTT TATCAATTGG TGAGCCGCAA TCTCATGCCC
GCGGGCATTG AAAACTATCT GCCACTGTTT TTTGATGAGG TTTCGACACT GTTCGATTAC
CTGCCCAAAA ACACTCAGTT AGTCACCTTG GGCGATATCG AAAAATCTGC TCGCGCCCAT
TTACAAGAAG TGGAAATACG CTACGAAGAC AGACGGGTCG ATCCGCTAAG GCCACTGCTT
GCGCCAAAAG AGCTGTATTT ACTGATAGAA GAATTATTTG CCGCTTTTAA ACCGCTGCCT
CGCTATCAAT TTGTGGCCCC AAATCCTGAC ACCAATGGTG TAGCGGCGCA AATTGATGCC
AGAGCCTTGC CCGAGGTAAG CGCCAATCAC AAATTAAAGC AGCCGTTAAT CGCACTGCAG
GATTATGCTG AGCAGGCGCC AAGGATGCTG TTTAGCGCAG AATCTGAAGG CCGCCGTGAA
GCGCTGCTCG AACTTCTTGG TAAAATCCAG TTAAAGCCTA GCGTATTTAG TCATTTTGAC
GAATTTATTC AAAGTGATGC CAGACTTGGC TTAATCGTTT CGCCCCTCTC CCGAGGATGT
TTGCTAGGGC TAGGGGCGCA AACCGCCGTG AGCATCATCT GCGAAACCGA ACTCTTTGGT
CAGCGGATTT CACAGCAGCG CCGCCGTGAA AAACAGCGCC AGATCAGTAA CGATACCCTG
ATTAAAAACT TAGCCGAGCT GAAAGTCGGC CAGCCCATCG TCCACTTAGA GCACGGTGTT
GCCCTTTACC AAGGTTTAGT CACCTTAGAT ACTGGCGGCA TTGTCGCTGA ATATTTGCAA
CTTGAGTACT CGGGGGGCGA TAAGCTCTAT GTCCCAGTTT CCAATTTACA TTTGATCAGT
CGCTATAGTG TTGGCGCAGA TGGGGAGACG CATCTTAATA AACTGGGTAA CGACACTTGG
GCCAAGGCAA AAAATAAAGC TATTGAAAAA ATCCGCGATG TGGCCGCAGA GCTTCTCGAT
GTCTATGCTC GTCGCCAAGC ACGTCCGGGT GAGAGCTGCG AAATCAATGA CGAAGAATAC
GCCCAATTCG CTCAAGGTTT CCCCTTTGAA GAAACCGTCG ATCAAGAAAG TGCGATTCAT
GCGGTGTTAG CGGACATGCA ATCGCCAACC GCAATGGACA GATTAGTTTG CGGTGATGTG
GGCTTTGGTA AAACCGAGGT CGCAATGCGC GCCGCCTTTG TGGCCGTGAA TGACGGTAAA
CAAGTGGTTG TGCTTGTACC CACAACACTC CTTGCCCAGC AACACTACGA AAACTTTAAG
GACAGATTTG CCGACTGGCC TGTCGTGATT GAAGTGATGT CACGTTTTAG AACCGCGAAG
GAGCAAACCC AAGTACTCAA ACAGCTCGAA GAAGGCAAAG TCGATATCGT GATTGGCACC
CATAAATTAC TACAATCTGA GGCAAAATTC GAGAATTTAG GCCTACTTAT CATCGATGAA
GAACACCGAT TCGGCGTCAG ACAAAAAGAG AAAATCAAGG CGCTGCGGGC CAATGTGGAT
ATTTTAACCC TCACAGCTAC CCCTATCCCC CGTACCCTCA ACATGGCGAT GTCAGGGATG
CGCGACTTAT CAATTATTGC CACGCCCCCC GCTAAGCGTT TGGCGGTGAA GACCTTTGTG
CGCGAATCCG ATCCCGCAAC AGTACGTGAG GCCATTCTGC GTGAGATCCT CCGTGGCGGC
CAGGTCTATT ACCTGCACAA TAATGTCGAA ACCATTGAAA AATGTGCCCA AGACATCAGC
ACACTGCTAC CTGAAGCGCG AGTCGTGGTG GCCCATGGCC AAATGCGTGA GCGGGATCTT
GAGCGAGTCA TGTCGGATTT TTATCATCAA AGATTCAACG TGTTAGTCTG TACCACTATT
ATTGAAACCG GTATCGACGT CCCGAGTGCC AACACCATTA TTATCGAACG CGCCGACACC
TTTGGCTTAG CCCAATTACA TCAATTGCGT GGCCGCGTGG GACGTTCGCA CCATCAAGCA
TACGCGTACT TAATGACGCC ACATCCTAAG CGCATGACTA CCGATGCTCG TAAGCGTCTA
GAAGCCATTG ATGCTCTTGA AGATTTAGGT GCAGGCTTTA TGCTTGCCAC CCAAGATTTA
GAGATCCGCG GTGCGGGCGA ACTCTTAGGC GATGAGCAAA GCGGCCATAT CTCTAAAATT
GGCTTTAGCC TCTATATGGA AATGCTGGAA TCGGCGGTCA AAGCGCTTAA GCAAGGTAAA
GAGCCTTCGC TGGCACAAAT GCTCAATCAA CAATGTGAGA TGGAACTCAG AATTCCGGCG
CTGTTGCCGG AAGACTATGT CGGTGATGTG AATATTCGCC TGTCACTCTA CAAACGTATC
GCCAGTTGTG ACAGCGAGGA AGCCTTAGAT GAACTAAAAG TTGAGCTTAT CGACCGCTTT
GGTTTACTGC CCGATGCTAC TAAAAACTTG ATGGAAATGA CCCTGTATAA ACATCAGGCA
ACTCGGCTGG GGGCGACTAA AATTGAGGTA CACGCTAAGG GCGGCAGCAT CGAATTTAGT
CAAGATCATA GTATCGACCC TGGCTTTATC ATCGGATTAC TACAAAGTCA GCCACAAATC
TATCGAATGG ACGGGCCGAA TAAGTTAAAG TTCATTCTCA GCGCCGAAAC GGCAAAAGAT
AGGCTCGCTT TAGTCAAACT CTTGCTCGAA CAACTATCTC AACATCAATC GCAACATCGT
CTTGGAGATA AATAG
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| Protein sequence | MTHISALTPP VVKNGTQMQT LSCIAGVGQA VTLASLIRQH QGTTLIVTSD TPTALSLELE
LNYLLAKTAI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQITHAEHSV VIVPVTTLMM
RLPPKSYLSS NVFVLKKGDK YQLHDVRQQL TDTGYHLVEQ VYEHGEFAIR GSILDIFPTG
VNMPLRIELF DDEVETIRHF DPETQRSSTP VNAVRLLPAK EFPTDSSAIE GFRQRYRRRF
EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDEVSTLFDY LPKNTQLVTL GDIEKSARAH
LQEVEIRYED RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQFVAPNPD TNGVAAQIDA
RALPEVSANH KLKQPLIALQ DYAEQAPRML FSAESEGRRE ALLELLGKIQ LKPSVFSHFD
EFIQSDARLG LIVSPLSRGC LLGLGAQTAV SIICETELFG QRISQQRRRE KQRQISNDTL
IKNLAELKVG QPIVHLEHGV ALYQGLVTLD TGGIVAEYLQ LEYSGGDKLY VPVSNLHLIS
RYSVGADGET HLNKLGNDTW AKAKNKAIEK IRDVAAELLD VYARRQARPG ESCEINDEEY
AQFAQGFPFE ETVDQESAIH AVLADMQSPT AMDRLVCGDV GFGKTEVAMR AAFVAVNDGK
QVVVLVPTTL LAQQHYENFK DRFADWPVVI EVMSRFRTAK EQTQVLKQLE EGKVDIVIGT
HKLLQSEAKF ENLGLLIIDE EHRFGVRQKE KIKALRANVD ILTLTATPIP RTLNMAMSGM
RDLSIIATPP AKRLAVKTFV RESDPATVRE AILREILRGG QVYYLHNNVE TIEKCAQDIS
TLLPEARVVV AHGQMRERDL ERVMSDFYHQ RFNVLVCTTI IETGIDVPSA NTIIIERADT
FGLAQLHQLR GRVGRSHHQA YAYLMTPHPK RMTTDARKRL EAIDALEDLG AGFMLATQDL
EIRGAGELLG DEQSGHISKI GFSLYMEMLE SAVKALKQGK EPSLAQMLNQ QCEMELRIPA
LLPEDYVGDV NIRLSLYKRI ASCDSEEALD ELKVELIDRF GLLPDATKNL MEMTLYKHQA
TRLGATKIEV HAKGGSIEFS QDHSIDPGFI IGLLQSQPQI YRMDGPNKLK FILSAETAKD
RLALVKLLLE QLSQHQSQHR LGDK
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